PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0049s0083.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | SRS | ||||||||
Protein Properties | Length: 259aa MW: 26851 Da PI: 9.4161 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 207.1 | 4.5e-64 | 57 | 215 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 ++g+++C +CGnqakkdC h+RCRtCCksrg++C th+kstWvpaakrrerq+++aaa++ + + +++ r+ l+ ++ ++s+t++ Mapoly0049s0083.2.p 57 TQGGTACLECGNQAKKDCLHQRCRTCCKSRGLSCPTHIKSTWVPAAKRRERQAAEAAAAAAG-QPRPKSKRARSLALSVPANPTTSHTNT 145 57889**********************************************99888874433.33344444444445788999999**** PP DUF702 92 ssaeskkeletss.......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s ++s++ ++++s lP+e++++a+f+cvrv++v+dg++e+aYq++v+igGh+fkG+LydqG+++ Mapoly0049s0083.2.p 146 SAGTSPRGSDINSgqpgrgpLPSELRTQALFKCVRVTGVEDGDHEFAYQATVKIGGHIFKGVLYDQGMDN 215 ************9******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.1E-57 | 60 | 214 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 8.9E-26 | 63 | 104 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.2E-26 | 166 | 213 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MRGMDVQPLG GADVRPGDAR PENKEDEQQH ALQLHDAQRA KAPPQPPGGA GGVSAGTQGG 60 TACLECGNQA KKDCLHQRCR TCCKSRGLSC PTHIKSTWVP AAKRRERQAA EAAAAAAGQP 120 RPKSKRARSL ALSVPANPTT SHTNTSAGTS PRGSDINSGQ PGRGPLPSEL RTQALFKCVR 180 VTGVEDGDHE FAYQATVKIG GHIFKGVLYD QGMDNGSTSA TNVADLQLGG RSMPTSSALI 240 DPTGLYGNPN SALLGALR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024359764.1 | 3e-82 | protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 3e-47 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A2R6WY87 | 0.0 | A0A2R6WY87_MARPO; Uncharacterized protein | ||||
STRING | PP1S373_11V6.1 | 1e-81 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 3e-41 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0049s0083.2.p |
Publications ? help Back to Top | |||
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