PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0049s0067.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family CO-like
Protein Properties Length: 397aa    MW: 44197.3 Da    PI: 4.8696
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0049s0067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.41.4e-082769440
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         r C+ +++ +++++C  ++ +lC  C  ++H        H++v
  Mapoly0049s0067.1.p 27 RACDVCGRDRARWYCAADEAYLCGRCDNSIHCVnalasrHERV 69
                         68****************************9434555667665 PP
2CCT706.1e-24351393143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          Rea+++RY+eKr+tR+F+K+irYe+RK +Ae+RpR+KGrFvk+
  Mapoly0049s0067.1.p 351 REARVMRYREKRRTRLFSKQIRYEVRKLNAERRPRMKGRFVKR 393
                          9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-72471IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4092471IPR000315B-box-type zinc finger
CDDcd000214.96E-82771No hitNo description
PfamPF006438.9E-72769IPR000315B-box-type zinc finger
PfamPF062031.3E-17351393IPR010402CCT domain
PROSITE profilePS5101716.192351393IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MTATTEDRSM DPKTATAVMS MAGRAVRACD VCGRDRARWY CAADEAYLCG RCDNSIHCVN  60
ALASRHERVR LNPNGTACKG GERTSSKSFP GLQIRKSSKS LKHHVNPKMR MIKDEMLAQS  120
FFSNPDDTSR VPGYPESLPE DESSRLGLPA YVPDLQASVD DLGGDGSASD GFPMDMPQEL  180
DSLERGDEDC VGGSDDEYLD FTDIVTEADF LDDKGDEGSV FSLDDIKSEH CHDAVKNEGF  240
GQFQPVCNDG FESINVKVEK DGSLFHQTQQ FSEEGQTKCL SLKLNYEDVL SAWSGRGPLW  300
TEDGGQPQTV PILSNIDMAL NLDLESYHRE QLGEVPVLGM GEEVSEVGVG REARVMRYRE  360
KRRTRLFSKQ IRYEVRKLNA ERRPRMKGRF VKRLPP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VRW00.0A0A176VRW0_MARPO; Uncharacterized protein
TrEMBLA0A2R6WY400.0A0A2R6WY40_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.16e-42B-box type zinc finger protein with CCT domain