PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0048s0099.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 377aa    MW: 41942.1 Da    PI: 4.106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0048s0099.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.000183203601055
                          HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          + RRd+i++    Lr ++P  +       ++ a +L +A++Y+k Lq
  Mapoly0048s0099.1.p 320 KSRRDKIKKTVKLLRNIIPGgD------CMDTAIVLDEAIHYVKLLQ 360
                          88*****************955......69**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.391310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0027315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-9319370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.95E-5320364No hitNo description
Gene3DG3DSA:4.10.280.102.7E-8320372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MFEDLDLGTA CKNFQNLAAD LVERWQSQKP CTESGRFNYI MFDQSGGKGR IFQHPSRLLH  60
EFPTSSSSPP QPNSPDLYQD MSLQEFEDTL LRNSVQDKCD PRMAACRETV ASAYAAVQQQ  120
QQDKNDDQIR HQNPTALFPE EVYSAFQASE EESSRAAGGG YLYEDADDLE ALLGCSDEEE  180
SITGNAPSSE LTCHFGLQED DNIRPCEPSS RKRPCVLDEE VDSKFKRQRS QEEEEEEVED  240
ICIGTCSSSV SVVDAFSGDS LGPPCALESE ADDCLDESAL ELQMLCDDFG YEMPEEQQCS  300
SCSKEDGDEG DSISSGSARK SRRDKIKKTV KLLRNIIPGG DCMDTAIVLD EAIHYVKLLQ  360
LQVQTLEAKR LVERVR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223228KFKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WYS40.0A0A2R6WYS4_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP596855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.12e-10root hair defective 6-like 4