PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0041s0025.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | ERF | ||||||||
Protein Properties | Length: 560aa MW: 59343.2 Da PI: 4.8721 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4e-19 | 211 | 261 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+W+AeIr+p+ + +r++lg+++t+eeAa+a+++a+ ++g Mapoly0041s0025.1.p 211 KKFRGVRQRA-WGKWAAEIRHPK----KaTRVWLGTYDTPEEAARAYDKAAIDFRG 261 59*****998.**********94....45**********************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.01E-31 | 211 | 271 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.4E-32 | 212 | 271 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 212 | 271 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.223 | 212 | 269 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-37 | 212 | 275 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 212 | 261 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 213 | 224 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 235 | 251 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MEDSLLEDAE SAAPEAHLQQ AQQQQKGNRQ WARPAQQAPM QTLYEGCAAS MGQWNSLGDP 60 EFLNYAPTLN AVSGLETIEG VSSTMVIRAA AAAAPLPRFA GATSNLGAGD DNLSDLQTIQ 120 GFSNWSAANS GDQNRISGGG WTFGGLHQAG AAPEESTASD ARNSARRVGR ADSMSSYSSA 180 DSTSELQAPS GPGEEEKSSA VEESASAAKR KKFRGVRQRA WGKWAAEIRH PKKATRVWLG 240 TYDTPEEAAR AYDKAAIDFR GQRAKLNFPD SVGPVPGSAA AAQAANVPRR VPSLPSDARK 300 DSISSPAAPK SAAAAPPHAA TATVIAAAAA VSVPMPPQQV QQHQQQQQIV YSSQFSINTD 360 VWSRDENDMI SGGSQWPSLT LDVNCDWRGS EVPSVATSSW RTLAEEGTLE KASTSMIPVV 420 ASAAMQLTRP EWQQAAGAGG AGLAQNALDL ILAQQLQQQQ RRSVLDNPSI DSRFQNLTVH 480 VQASPLAPNQ ASDLLPAAVA AAAAADASFD LENFIEEAVQ RPLSDHIPTS QYMTAERNFS 540 SGLFWNYDQD AQHHDHPPA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-19 | 208 | 272 | 1 | 66 | ATERF1 |
3gcc_A | 6e-19 | 208 | 272 | 1 | 66 | ATERF1 |
5wx9_A | 3e-18 | 207 | 269 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6X1Z1 | 0.0 | A0A2R6X1Z1_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 6e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0041s0025.1.p |