PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0040s0004.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 511aa    MW: 58467.3 Da    PI: 8.7404
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0040s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.6e-14453148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                         r+rW +eEd+ll ++v+++G ++W +++++ g  + R +k+c +rw +yl
  Mapoly0040s0004.1.p  4 RQRWQPEEDDLLRNYVQEFGAKDWGKVSERTGnaLDRDAKSCMERWKNYL 53
                         89**********************************************97 PP
2Myb_DNA-binding34.35.4e-1161104348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          + T+eE  l + + +++G++ Wk+Ia++++ gRt+k +  +w  y+
  Mapoly0040s0004.1.p  61 PLTQEEKNLVISLQEKYGNK-WKKIAAEVP-GRTAKRLGKWWEVYK 104
                          67******************.*********.*******99998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.96153IPR017930Myb domain
SMARTSM007172.0E-12355IPR001005SANT/Myb domain
SuperFamilySSF466896.6E-22498IPR009057Homeodomain-like
CDDcd001671.12E-8653No hitNo description
Gene3DG3DSA:1.10.10.605.7E-19660IPR009057Homeodomain-like
PfamPF139216.8E-14768No hitNo description
PROSITE profilePS5129421.67654108IPR017930Myb domain
SMARTSM007177.1E-1058106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-1561106IPR009057Homeodomain-like
CDDcd001671.69E-663103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MKERQRWQPE EDDLLRNYVQ EFGAKDWGKV SERTGNALDR DAKSCMERWK NYLKPGIKKT  60
PLTQEEKNLV ISLQEKYGNK WKKIAAEVPG RTAKRLGKWW EVYKEKEKKD REKEWGTPLG  120
DELAVNANYN ELFKHIAEKL DQRQVGSSSS SVPAPPSFFL QHPFTATTSR ILGSSTMETD  180
PFSPQSLYLR HQNPLSIGTV SSSSSMNTTS LPVASPFNFE TEEARLIESG SSARPQPTSV  240
DNPIGPSFSL VPAHVQSRSR EASSLPPWMS TLPSTSGSGK VFPNLGVSQE TTYVGRSRLR  300
SEFSADRSRH LSVGLSLASS PSPRDGVDVS SPNWSHNTEG LTSKTRLSVG EEPFPGHRTS  360
WYHVQHPTGE SSGGLMDEVR IRNVRPNPKS LEDLIEYWKD LDDKSKIWSA QRKEESWRIK  420
RLKRQMVEEK LAKGRKKAEE VDSQTQALRL EERKYMEDLE LEYWEKVEMI EREAESEESR  480
RFDEWIGRQQ EIIQAQKRFL EEYNRRSEAV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A3e-15310610109MYB21
3osf_D3e-15310610109MYB21
3osg_A3e-15310610109MYB21
3osg_D3e-15310610109MYB21
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6X2H10.0A0A2R6X2H1_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP50961421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.12e-42MYB family protein