PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0037s0040.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 477aa    MW: 54976.1 Da    PI: 5.8825
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0037s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005425444221
                          EETTTTEEESSHHHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                          +C  C++ F++++ L++Hi 
  Mapoly0037s0040.1.p 425 TCLRCDQDFNSQEALTQHIL 444
                          699***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003553.2230255IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6230256IPR007087Zinc finger, C2H2
SMARTSM00355150256279IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280258279IPR007087Zinc finger, C2H2
SMARTSM00355100298321IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280299321IPR007087Zinc finger, C2H2
SuperFamilySSF486951.13E-5315337IPR011031Multihaem cytochrome
SMARTSM0035522322347IPR015880Zinc finger, C2H2-like
SMARTSM0035519348372IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280350372IPR007087Zinc finger, C2H2
SMARTSM003552.8392423IPR015880Zinc finger, C2H2-like
SuperFamilySSF486951.13E-5394455IPR011031Multihaem cytochrome
SMARTSM003559.2424449IPR015880Zinc finger, C2H2-like
SMARTSM003550.4450474IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538450476IPR007087Zinc finger, C2H2
PROSITE patternPS000280452474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MQGEHAISWP EAVKIRRHET GHLDSFHWRH DVPSGVVVGD EQFLKRGVFW SRPSTHDEEE  60
AEELYGGGRR HRLRPRQVEA EHVNAEEKME PCGCGDEGYC RAMCGMASSD SLEMDSHNSA  120
HSRCALCRLQ FPTRTAPEKH LSSDAGSRNF CPLCELDFPC KQALRVHVCS SILNRSSSRR  180
RPSDAVDELV GVTANLNDLP ASLGEIECDC CPSRASSSPE VQLQSQRDQI RCDPCKQVFC  240
SRKSLVDHLK ELPRHTLCSR CETDFQSEHE PSDHRRSYHE ELGQGYDEEQ EEDQDDDVCC  300
YLCIEPFDSV LDKVWHEYDQ HLNCSACFRI FASRKAFDAH LSSSKGHNFC FECNMNFPFR  360
EQLVQHRRCT EHKVPFNCLP RMSDEGVKKK VYVCNKCHDY EGDDIFMKFA SEQELQNHID  420
TMHNTCLRCD QDFNSQEALT QHILQSERHH FCRECDYDFP SKQAFDMHCR TGLHMD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6X4250.0A0A2R6X425_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.14e-07indeterminate(ID)-domain 14