PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0036s0109.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1418aa MW: 153924 Da PI: 8.19 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 16.8 | 1.5e-05 | 570 | 588 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+++CHeG C C+ Mapoly0036s0109.1.p 570 CGRHSCSRICHEGSCELCK 588 ***************9886 PP | |||||||
2 | zf-NF-X1 | 17.1 | 1.2e-05 | 634 | 651 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H Cq++CH+GpC++C Mapoly0036s0109.1.p 634 CGNHECQEKCHPGPCGEC 651 ****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 4.12E-5 | 396 | 466 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50016 | 8.662 | 404 | 468 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 407 | 465 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 8.963 | 407 | 466 | IPR001841 | Zinc finger, RING-type |
CDD | cd06008 | 7.33E-9 | 499 | 553 | No hit | No description |
SMART | SM00438 | 0.093 | 515 | 533 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.78 | 516 | 532 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.95E-13 | 560 | 608 | No hit | No description |
SMART | SM00438 | 0.0015 | 570 | 589 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.7E-4 | 570 | 588 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 8.95E-11 | 624 | 667 | No hit | No description |
SMART | SM00438 | 2.7E-4 | 634 | 653 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.8E-4 | 634 | 651 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.47E-14 | 688 | 735 | No hit | No description |
SMART | SM00438 | 9.0E-4 | 698 | 717 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.073 | 700 | 716 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 220 | 763 | 794 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 32 | 763 | 774 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 9.33E-10 | 792 | 844 | No hit | No description |
Pfam | PF01422 | 0.042 | 796 | 819 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0043 | 802 | 821 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.24E-5 | 849 | 897 | No hit | No description |
SMART | SM00438 | 0.0069 | 859 | 877 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 13 | 859 | 876 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 6.6 | 912 | 946 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.11 | 912 | 927 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.12E-5 | 944 | 993 | No hit | No description |
Pfam | PF01422 | 140 | 949 | 975 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.018 | 955 | 976 | IPR000967 | Zinc finger, NF-X1-type |
SuperFamily | SSF82708 | 9.02E-7 | 1064 | 1161 | IPR001374 | R3H domain |
PROSITE profile | PS51061 | 10.734 | 1083 | 1149 | IPR001374 | R3H domain |
Pfam | PF01424 | 1.9E-5 | 1084 | 1145 | IPR001374 | R3H domain |
Gene3D | G3DSA:3.30.1370.50 | 7.1E-5 | 1108 | 1155 | IPR001374 | R3H domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1418 aa Download sequence Send to blast |
MEDSYGNYSV GSIGGRDIAS PVVYAHPGEP GGRGDSGSRG SHGNHRGYRR GGSYQRGRNF 60 VDNRPNSHEH PQFANARRHV GGHGGGFDSI PDSPQSGDSF IGEREGRGRG VTGPLRFNSN 120 NFRGGRTVSQ DNPQDYRSYA SGESSFDGNR ERWSVSEAAP AGDSRSDDQL DVHRENQDHR 180 ISEQQRRFAE SNRFGGSRRG SGAGRGQRFN RRGSSDGSHA PQTSRRGGTS YHEVEDGRRL 240 DRGSRGRHDE NREIVVANYT NHSEDSEHGS VGLLAHLEQE IPQASSTTSN NYNRDGNWPE 300 FFGEVEYDSR PGSSSSDNVP FRENAGRVYV GDSGGGRGRR ESYRENRKAD GPSVIQGHRR 360 DNHQITGRKK AVFQADNGEA LWRAKKSEVP QLVQELEERL TRGTIECMIC YDMVGRSSPM 420 WSCGSCYAIF HLNCIKRWAR APTSTDLSVS SANHSLEGNW RCPGCQAVEL ITARDLRYNC 480 FCGQVDNPPV DHYLTPHSCG GPCKKPLDRS KTKRCNHYCT MQCHPGPCPP CSAVAPSEFC 540 PCGKKTFTRR CGEQKAISSC GDVCGRKLSC GRHSCSRICH EGSCELCKVD VNTQCFCGKK 600 HETMSCGAVE IQGNVDFEKG ILSCGSRCLK TLSCGNHECQ EKCHPGPCGE CEVSPAMLQT 660 CPCGKKKLLE LVGSGRPRIN CTDPVPTCGQ GCSKVLPCKV HVCRDLCHSG PCPPCRVPVE 720 QKCRCGSSSR SVACHVSQGN PFVGEETEGL FLCERKCGQK KSCGRHRCNN RCCPTTNGSS 780 LQDTSDRDPH DCILACGKKL RCRQHNCQER CHSGHCPPCL ESIFTELSCA CGKTSIPPPV 840 PCGTPLPSCQ EPCSFHQPCG HPATHLCHFG DCPPCTVAVT KECVGNHVLL RGVPCGSRDI 900 KCNKLCGKTR QCGLHACARA CHVPPCDNVE DASARGVKTV KNSCGQPCGA PRRDCSHTCI 960 LTCHPSAPCP DNRCKVVVTI TCGCGRISGD VPCDAGGSST SRASAETEMI LSRLPAPLQP 1020 IAQSSERTPL GQRKLSCDDE CGKLEKKRLL ADAFGVELSG DFTSGDTGAL GSEMLSEMLR 1080 RDPQWVLAVE ERFKFLLLGP KVSTLKVHVF CPMAKEKREV IYQLAERWSL SVSSAGREPR 1140 RFPIVHVTNK SKVPYTRMLS KSQLPPAGQQ TPPAFNAAVD MEPGLVVAFF DVPREVDMSG 1200 LVLRFAGECE LVWLNDKNAL AIFGDVARAA TALRRVDHTT AYKGAISVPG SAVYTSSKGA 1260 WGQAAGSSFA TKPSAKKKAV QESSWVEDAW GDDNRKSSKE QLTGAWQRKE PSIITKNPWG 1320 ALEQTRARVS DARLKGCYVS SQPSGTSQAS TKEGESSAQG ERTKPVKSTT KERGDQAGPS 1380 GASKEVSNCA TVITKSPADD SLVPQNGEKD DWERLLD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024365063.1 | 0.0 | NF-X1-type zinc finger protein NFXL1-like | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A2R6X4X4 | 0.0 | A0A2R6X4X4_MARPO; Uncharacterized protein | ||||
STRING | PP1S215_60V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3950 | 14 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0036s0109.1.p |