PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0035s0054.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family NAC
Protein Properties Length: 608aa    MW: 65831.3 Da    PI: 8.4641
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0035s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.46.8e-50251512128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGfrFhPt+eelv +yL++ v+g+++++ e i+++d+y+++Pw+Lp+ +  +ekew+fF++rdkky++g r+nr+t+sgyWkatg+d++
  Mapoly0035s0054.1.p  25 LPGFRFHPTEEELVGYYLRRMVQGRRNSV-ELIASLDLYQYDPWELPALAFMGEKEWFFFCPRDKKYPNGARPNRVTASGYWKATGTDRP 113
                          59************************999.89***************7666789************************************ PP

                  NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          v ++ +++ +glkktLvfy+grap+g+kt+W+m+eyr+
  Mapoly0035s0054.1.p 114 VRCSgDSRCIGLKKTLVFYTGRAPRGNKTEWIMNEYRM 151
                          **9867778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-5624193IPR003441NAC domain
PROSITE profilePS5100554.90324193IPR003441NAC domain
PfamPF023654.6E-2626151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MESIGSKEEG QEEPTAVPEW SEMALPGFRF HPTEEELVGY YLRRMVQGRR NSVELIASLD  60
LYQYDPWELP ALAFMGEKEW FFFCPRDKKY PNGARPNRVT ASGYWKATGT DRPVRCSGDS  120
RCIGLKKTLV FYTGRAPRGN KTEWIMNEYR MPKPAERSIS VMTSGVNSIS YSFSTYDNFV  180
IKNDVALCRI YRKSSSALNS ANFISAIGAR DLEERTNRMM SRFESNPAAG THQQQNHIQR  240
LQGPDVPNVN VRVSSDMPMA PLSAAAPSSD NDCAQQLSTS KTTTVVSHGQ AVEAAKTQRQ  300
QQLIDGPAQG GFDGVSPMID CTGTTTSEEA SRQLQIALRT AMAKLDGAGS SSNVNFNDGD  360
SLNSNGSGIF GRFRNRLVQD AAAAAACPST SVHVMRSPSP EAAAAATATF NNSHTSRVPP  420
TKAPDHLNQP MNSPRDIPTV ARSNRSSSAE TVAAFAPAKS HPTCRTPRVS IPPSFNHHVN  480
SCPSTKSTTT TSHSLEEGSN ADANTVVSGP TAINNRSNIS ASSISQLEDQ VQSLVNACSI  540
PPLSNTYSLK RSRFTKVQHA DGESCPMAKM PSAAQYWRQS SYAPSQTATA AAQLSTFDAL  600
SGLTFQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-562619719169NO APICAL MERISTEM PROTEIN
1ut4_B5e-562619719169NO APICAL MERISTEM PROTEIN
1ut7_A5e-562619719169NO APICAL MERISTEM PROTEIN
1ut7_B5e-562619719169NO APICAL MERISTEM PROTEIN
3swm_A5e-562619722172NAC domain-containing protein 19
3swm_B5e-562619722172NAC domain-containing protein 19
3swm_C5e-562619722172NAC domain-containing protein 19
3swm_D5e-562619722172NAC domain-containing protein 19
3swp_A5e-562619722172NAC domain-containing protein 19
3swp_B5e-562619722172NAC domain-containing protein 19
3swp_C5e-562619722172NAC domain-containing protein 19
3swp_D5e-562619722172NAC domain-containing protein 19
4dul_A5e-562619719169NAC domain-containing protein 19
4dul_B5e-562619719169NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6X5840.0A0A2R6X584_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-65NAC domain containing protein 35