PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0034s0034.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 517aa    MW: 57141.8 Da    PI: 7.3791
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0034s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.67e-144290148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +l+  ++  G+g +W t +++ g++R++k+c++rw +yl
  Mapoly0034s0034.1.p 42 KGPWSPEEDAKLKSFIEHNGTGgNWITLPSKAGLKRCGKSCRLRWINYL 90
                         79*********************************************97 PP
2Myb_DNA-binding49.59.8e-1697139246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g++T+eE++ ++++++q G++ W++Ia+ ++ gRt++++k++w++
  Mapoly0034s0034.1.p  97 GSFTEEEEKTIYRLHAQIGSR-WSLIAAQLP-GRTDNDIKNYWNT 139
                          78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.5853790IPR017930Myb domain
SuperFamilySSF466891.41E-2639137IPR009057Homeodomain-like
SMARTSM007173.6E-104192IPR001005SANT/Myb domain
PfamPF002491.5E-124290IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-224397IPR009057Homeodomain-like
CDDcd001675.12E-74490No hitNo description
PROSITE profilePS5129424.41291145IPR017930Myb domain
SMARTSM007171.1E-1495143IPR001005SANT/Myb domain
PfamPF002498.1E-1597139IPR001005SANT/Myb domain
CDDcd001674.68E-1198141No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2598145IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MQPLPTKQPS AATFVAVIFL ALVAPFVAMG RAPCCDKANV KKGPWSPEED AKLKSFIEHN  60
GTGGNWITLP SKAGLKRCGK SCRLRWINYL RPDIKHGSFT EEEEKTIYRL HAQIGSRWSL  120
IAAQLPGRTD NDIKNYWNTR LKKKLLERAS NMWCGRPHHS FQIYPMNQPA NDQMSNAVGR  180
EGLLNSQFLH AQAYYQYVQQ QQPQYYLPQQ QQQPQPIQDP SQTVQLPTVL QHQLHMRSIK  240
NELVDEHQQQ QAPTGGVVES ERLRDIESSL RSIVDESSSR TFDARRAFQR LHCLSNRLPA  300
NGNPMSPAAV ATSHHNTSPT SSCSNLSSDR NSFGVQQIAD SAFSDSGYTM YEDPAAREPS  360
TTMLNTSILG SASQQQVASL PDTSTPESLL STSRFEDGVF DDLSMYNRSQ DLSEVAVVDR  420
ALGTGGVKEE SHQASGGGSA DWWANMDLVA PPGPLNQKST VLAANSMMRW SIPTPRCGAE  480
NIYNSPQAQL TSQSHGTQPL DGMNSYSDSF LSKLIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27421457108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VX480.0A0A176VX48_MARPO; Uncharacterized protein
TrEMBLA0A2R6X5R30.0A0A2R6X5R3_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-71myb domain protein 84