PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0031s0160.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 438aa    MW: 43874.5 Da    PI: 9.1997
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0031s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.9e-063355527
                         --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                         +Cr+f     C+yGd C+F H+p
  Mapoly0031s0160.1.p 33 ECRRFNTPEGCPYGDACRFRHVP 55
                         5******************9975 PP
2zf-CCCH23.68.9e-08182208127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++t+lC+++     C++G++C+FaHg+
  Mapoly0031s0160.1.p 182 FRTRLCNRYDTPEGCRFGEKCHFAHGE 208
                          58***********************96 PP
3zf-CCCH34.92.6e-11402426126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt+ C ++a+ GtC +G+rC+FaHg
  Mapoly0031s0160.1.p 402 YKTKMCENYAQ-GTCTFGERCHFAHG 426
                          9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.32855IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8872856IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-53453IPR000571Zinc finger, CCCH-type
PfamPF146080.153453No hitNo description
PROSITE profilePS5010312.31483111IPR000571Zinc finger, CCCH-type
SMARTSM003560.5883110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-684109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-785108IPR000571Zinc finger, CCCH-type
PfamPF146082.891108No hitNo description
PROSITE profilePS5010313.497181209IPR000571Zinc finger, CCCH-type
SMARTSM003560.024181208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-11182213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7182212IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-5182208IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.42E-14309386IPR004088K Homology domain, type 1
SMARTSM003222.7E-12315385IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.0E-15315384IPR004088K Homology domain, type 1
PROSITE profilePS5008414.739316380IPR004088K Homology domain, type 1
PfamPF000134.3E-11318381IPR004088K Homology domain, type 1
CDDcd001051.60E-13320380No hitNo description
Gene3DG3DSA:4.10.1000.102.5E-15399432IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-9400432IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624401428IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6401427IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7402426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDPYGPPRKR PRADSSLNGN GNGHSAAGSS EMECRRFNTP EGCPYGDACR FRHVPGAPTG  60
PIAPSVASLS LLPEKESSGG GNANRTKPCT KFFSTSGCPY GEGCHFLHYV PGGVPLGINT  120
LSNMSSSSGM MSGSGGGAGG SGGGGSGSGG GGGVRKVLGG VGPAGIPAPL SPSDQGANLG  180
GFRTRLCNRY DTPEGCRFGE KCHFAHGENQ LRKSTSSSNP PERESLVEFP RSRGPAPSSS  240
GSGYRQGSGG SGSGGGMFVS EGRFGGGGGG GGGGGGGGGG GGGGGGGGGG RDGGRPYGLR  300
EPTPPGLAAA ASFGASSTAK ISIEASLAGA IIGKGGVNAK QICRLTGAKL SIREHESDPT  360
LRNVEMEGSF EQIKQASTMV RQVLMHRDNL PVKPAGFGSH NYKTKMCENY AQGTCTFGER  420
CHFAHGANEL REHSMRA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386818.11e-130zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386826.11e-130zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386832.11e-130zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386840.11e-130zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A2R6X7V90.0A0A2R6X7V9_MARPO; Uncharacterized protein
STRINGPP1S59_351V6.11e-129(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-41C3H family protein