PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0029s0015.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | HB-other | ||||||||
Protein Properties | Length: 273aa MW: 30109.8 Da PI: 7.3215 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.6 | 2.4e-19 | 20 | 74 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +R++ ++ q+e Le+l+++n+yps+e r++L+++lgL+e+q ++WF rR k++k Mapoly0029s0015.1.p 20 SRRKKSAAQIEYLERLYAENKYPSEEVRAKLSAQLGLSEKQMQIWFTHRRHKDRK 74 69999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-18 | 6 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.74E-17 | 8 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-17 | 17 | 79 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.4E-17 | 20 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.65E-18 | 21 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MEVLSMDEDG GSPVQRKTTS RRKKSAAQIE YLERLYAENK YPSEEVRAKL SAQLGLSEKQ 60 MQIWFTHRRH KDRKDGVEDV KLTFYAMRHK GGEAHLDFME ELNSGKRMGG SFNGREDMVP 120 SNGFQPQSFH GGEISNGHYI VDKRMERTER TDSESDNSEL GEAEDLVGNG YLPPMKRGSM 180 VNRKDRGVYK RPLPVPPRGK PGAHELENAA IAAVEAQLGG AIRVDGPLLG MEFDSLPPDA 240 WSHLGNGTVP IPVQGVQGRG VGSGRMLTVG TY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 74 | RRHKDRKD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A176WKA2 | 0.0 | A0A176WKA2_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6X8P4 | 0.0 | A0A2R6X8P4_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8823 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 1e-24 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0029s0015.1.p |