PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0028s0100.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 483aa    MW: 52517.6 Da    PI: 5.4377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0028s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12276318855
                          HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           Er+RR+++N+++ +Lr l+Pk +      K++Ka+i+  A++Y+++Lq
  Mapoly0028s0100.1.p 276 SERKRRKKLNDGLYTLRALVPKiS------KMDKASIVGDAIDYVRELQ 318
                          6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.89E-15268322No hitNo description
PROSITE profilePS5088815.701268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-17269329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-17274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16275332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10276318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.78E-5405481No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDKKPLIIPG DNRLDSSQNL HHSVLVGAAH EMFQSGHGLG TSSNMTPGSM CNLHPPLSSF  60
GAESNLHELL AHASPHAGSH AQSLNHSSNH PADFLATLGD GVLGESSDNH MFHRQMEFSK  120
QKWTTPSKLT PGPFWMLPHH LDPANYPLPG LAVSGTSSPK TNVGPSAGED SSNPNRQVWC  180
ERGANQVLMK SEDNVATLKL PMVVKPDRSL LCDGSGAPVD SPKGANGNLI NRDTSDMDAK  240
QLDSSDCSDH NMDEQEEKDQ ATRNGAGRTV SKNLVSERKR RKKLNDGLYT LRALVPKISK  300
MDKASIVGDA IDYVRELQKQ VEELQADISD IESTKPTTGP GGEASLSSVA EPSTAQGSTA  360
PSSGRSWEEE GHRTSEGQPR QEMSEAPFED TTEQKILELD VAKMEEQIYH LRIFCTKGPG  420
VFVQLMQSLE ALGLEIRNAN LTSFQENLLN TFIAEIKDWE MMKTEEVKKA ILDVAARFGL  480
QP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1469620.0KJ146962.1 Marchantia polymorpha FIT1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E3DA740.0A0A0E3DA74_MARPO; FIT1
TrEMBLA0A176WB570.0A0A176WB57_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-37bHLH family protein