PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0028s0058.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 527aa    MW: 58120.3 Da    PI: 8.9474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0028s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.3e-11452498455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +Er+RR++ ++ f+ Lr l+P        K + a+iL  A++Y+k+L+
  Mapoly0028s0058.1.p 452 NHMLAERKRREKQKENFSALRALIPFV-----SKTDRASILGDAIQYVKQLR 498
                          68899*********************6.....4*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.3E-1646135IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.25448497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16451517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-16452515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-8452497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-13452502No hitNo description
SMARTSM003534.1E-13454503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MGQGEQLREL VRSMGWSYAV LWSIPPLMTE LVWTDGWYEA SNLKVNVERL FNSSYKTCSF  60
APGYGYVGKV FTQGQHIWVT GDAVHRQSTT SGQATFFSSA GIQTLLCFPW FNGVVELGAE  120
GLVPQNDDLL QQIRRFLSNT PASKLQQQQQ HLRGIPAGDD SCHSSRFSSL SPSQGPLTSQ  180
GLSSDDAEGG GLSDTTLNQP VDSCPSLSME DRIMRQHFRL TAMSGIDSSC YWAQGPAAVD  240
AEILLPAKSS SMSQVTGAAA GGLHHQGAHS GITGMIGADW RLDFGSDIHQ LTSSPTSTLQ  300
QAVFTPLPGT EHEEFESSSF LVASSQLNQT AKSLYQQQQH LQQMAAKSPT SSGVEISSNQ  360
QQHLRGFLST KKTGTPAFKP WKGQKQVIGV KRQKSQSNQV LLQRSIKMVH QISLLNQKKD  420
EKKRTEQMAL AMRRAPTEAR EYHSCHDEAA INHMLAERKR REKQKENFSA LRALIPFVSK  480
TDRASILGDA IQYVKQLRSR VQELESINRE LEAQIPNSQR KPNSSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14448515471Transcription factor MYC2
5gnj_B3e-14448515471Transcription factor MYC2
5gnj_E3e-14448515471Transcription factor MYC2
5gnj_F3e-14448515471Transcription factor MYC2
5gnj_G3e-14448515471Transcription factor MYC2
5gnj_I3e-14448515471Transcription factor MYC2
5gnj_M3e-14448515471Transcription factor MYC2
5gnj_N3e-14448515471Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1456461ERKRRE
2457462RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6X9F30.0A0A2R6X9F3_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1236334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-16bHLH family protein