PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0026s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | MYB | ||||||||
Protein Properties | Length: 355aa MW: 36638 Da PI: 8.7483 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 63 | 106 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT e d+l+ +a + + + +W+ +a++++ g+ + ++ ++ Mapoly0026s0070.1.p 63 SWTSEQDKLFENALAVYDEEspnRWDNVASMVP-GKDAADVMKHY 106 7*****************99*************.**********9 PP | |||||||
2 | Myb_DNA-binding | 37.4 | 5.8e-12 | 189 | 233 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + +++G+g+W++I+r + Rt+ q+ s+ qky Mapoly0026s0070.1.p 189 PWTEEEHRSFLLGLAKFGKGDWRSISRNFVISRTPTQVASHAQKY 233 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.305 | 59 | 114 | IPR017884 | SANT domain |
SMART | SM00717 | 4.6E-7 | 60 | 112 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.11E-11 | 62 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.63E-7 | 63 | 109 | No hit | No description |
Pfam | PF00249 | 9.7E-6 | 63 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.1 | 181 | 238 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.51E-16 | 184 | 239 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-9 | 186 | 236 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.4E-16 | 186 | 236 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 187 | 232 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.54E-9 | 189 | 234 | No hit | No description |
Pfam | PF00249 | 2.1E-10 | 189 | 233 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MAAPSPGPSP SSPSTASTPI PASAAAAAAG PSAAPVVPTP SAVSAPTIPV IPAPDVAPAV 60 SSSWTSEQDK LFENALAVYD EESPNRWDNV ASMVPGKDAA DVMKHYELLT EDVTSIDAGR 120 VALPSYILPG SLSGADAAGE QSDSSVSKNK AWSGQSPGVS ASGTSGTVGG LERKSSSSKA 180 DQERRKGIPW TEEEHRSFLL GLAKFGKGDW RSISRNFVIS RTPTQVASHA QKYFIRLNSI 240 NKDKRRSSIH DITSVNSAGV EVMQGSPGPI TGQSPSGTST SGQPLPHKTQ PAFQGGMYVT 300 PVGPGATTGL GTPVYPPGQM GYGVRGHMVR PGMGGPPMNM THMTYSMPQP AMHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-15 | 64 | 130 | 11 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366442.1 | 1e-104 | transcription factor SRM1-like | ||||
Refseq | XP_024366443.1 | 1e-104 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 6e-74 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A176VBW6 | 0.0 | A0A176VBW6_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6XAR6 | 0.0 | A0A2R6XAR6_MARPO; Uncharacterized protein | ||||
STRING | PP1S256_11V6.1 | 1e-103 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-69 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0026s0070.1.p |
Publications ? help Back to Top | |||
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