PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0025s0136.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 632aa    MW: 70350.3 Da    PI: 7.2346
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0025s0136.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-07477499326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          t  C ff r G Ck G+rC F H+
  Mapoly0025s0136.1.p 477 TQVCYFFKR-GRCKKGNRCEFLHD 499
                          788999999.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.8228250IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
SMARTSM0035519251275IPR015880Zinc finger, C2H2-like
PfamPF104531.3E-11286330IPR019496Nuclear fragile X mental retardation-interacting protein 1, conserved domain
SuperFamilySSF902294.32E-6474499IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.741474501IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-5475500IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-5476499IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-6476500IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000491Biological Processsmall nucleolar ribonucleoprotein complex assembly
GO:0005634Cellular Componentnucleus
GO:0048046Cellular Componentapoplast
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MRPGQNFYYA QHQQQAAQVN SGFRPGQQHH QHQQNPAFLP SLYAGPHDLH SGVQVVALPI  60
GQQFAVTPIP PPQQWGHIRS ESPSWGNGNF PSQGLGPPFH GQQFMHHEPN VAFISPQHLS  120
GEGARGNSSW GYGQHDGPSG RFERNPTHQD IRRPVEGMRQ MEYLSHERSS RGSSRDKSYD  180
DNRSGSWSNG SGSSNSRNIS GGKTGKGRGG GGGGAMDREP MRPQAISLHC DPCDRTLSNA  240
QQFAAHKSTH VKCDVPGCSF EASGRVVKEH KQTSHDSLSS SAPSRPGSFK SKESEEEVLR  300
WRDERKRNYP TTANIKHKAE EMQARKARGE LVDEDARKRR ERLKEILARQ AELGVPVAEL  360
PAYYLSDRYG GSKDKSESRG GGRKENNRNG KRRLNADQGS GTAAVSDPKE ERSEPPLKQV  420
KIEEPNPPTC VEPSRESEPA GPGELETPKA EATEELDSEA AATNSGGKGQ DPSKKYTQVC  480
YFFKRGRCKK GNRCEFLHDK RSDRPKKPKK DLAAAANNKR QPSLLAKLLE SDIRREKSYL  540
LQSFRFFVNN MFLLEWPEKP LKFFDWTDVE DQANSENEVA RIDKKLQEEL EAVMEEDSDE  600
EEDDQELEGL VIPSEEQHGN GESSTQSDSA L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XBF60.0A0A2R6XBF6_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP852622