PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0025s0094.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

MYB_related

Protein Properties

Length: 1029aa MW: 115200 Da PI: 4.544

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0025s0094.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.9e-07	705	753	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +rWT+eE+ ++ +vk+ ++ W+ ++ ++ g+ k+++s+++++ Mapoly0025s0094.1.p 705 DRWTKEEERTFKALVKMNPPSldknFWEHLPEAFP-GKKMKELVSYYFNV 753 69***************88**********.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.58E-5	703	754	IPR009057	Homeodomain-like
SMART	SM00717	4.3E-5	703	756	IPR001005	SANT/Myb domain
CDD	cd00167	9.00E-6	706	754	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1029 aa Download sequence Send to blast
MIGQQKRSLE HSVSPQPTKY QKQFDDNFCE TSTRIASSAG EQFDFHELFS GVHSHHASPS 60 PSATRSDSTR SGDKASALDP SDQHREPIVH SEVDQGPQCS ACHELPYPSP GYEGCESAEA 120 LCTQTCCEEK VDIHKECASF PSDLGNHAQG TIGSVDIFSA DNSGPARLHA AEDLSSLHGK 180 SSQKEELLKN AFKSTSLQLG GIECGSSCQE DEGPSTTDAY EMGIEGDRAF VECVRKSMES 240 RRLNGFRPLL VYPSARARIE DFANEGGLDD EKGGKFSLFV GEQFAESDPY QEKVERTMVN 300 DGDLQKRGVC RQISDRFEDQ FDKQISRKEK DAGRQHSFYR GGGGQAGQRI QCASTRPGIP 360 NSIQGWEDTQ AAQSSDSQLP KNHEGLSSPP RQETTKEVGR NSEELGRASN SALEGNDRSL 420 SSTLIWIKRM ALDPGNPHMG EGVEGSGQNA EWVKDCASQA ERIRGLFCKR KEEIRLGGAE 480 PHLHQAKQNS TSYYYEELPR SDHPSVERFR ASRERVAQYG YPGSPGSHRS FHESSHYLQR 540 GSSPQSQHHW SSQTSQRLPR QSNFHSSYIE TAYSDYNNLI ERPRKRIPIG SDFQAHVPPE 600 KSVETKSSCQ REGPLGDETQ SSDEDDEESE RWFGKQVWPP PGFNSSSYPD MQVGVGRAIS 660 CTCLDPESID CVRTHVRQEK LRLEREVGQA FYTWKFDEMG ECVSDRWTKE EERTFKALVK 720 MNPPSLDKNF WEHLPEAFPG KKMKELVSYY FNVFMLKRRA VQNRLEGRQI DSDDDETELP 780 EGDSEDSEDY DSGEEPDEEA DEEVSEAEDD TDQLNESYGG GERSGKLLEH TGFCDLRGVN 840 LVYCSTNMDS LGEGPDSVHT NLCPSSDLNL ENEEQDYRSS RREERDVRLH SVQLTTKWTL 900 EQHDEEKHVE LPVTVLGEEE LQEVKTWEDP HWDEADNDRD VVKQDGDLDA TFSGKDDQGA 960 LSPIRNNSVQ KVIGFDDDQQ NSLSSCESEV WVGTMDTAPR KADDKLLSTN GMIQELFGDD 1020 SPEAHSPS*

Sequence ? help Back to Top

Protein Sequence Length: 1029 aa Download sequence Send to blast

MIGQQKRSLE HSVSPQPTKY QKQFDDNFCE TSTRIASSAG EQFDFHELFS GVHSHHASPS  60
PSATRSDSTR SGDKASALDP SDQHREPIVH SEVDQGPQCS ACHELPYPSP GYEGCESAEA  120
LCTQTCCEEK VDIHKECASF PSDLGNHAQG TIGSVDIFSA DNSGPARLHA AEDLSSLHGK  180
SSQKEELLKN AFKSTSLQLG GIECGSSCQE DEGPSTTDAY EMGIEGDRAF VECVRKSMES  240
RRLNGFRPLL VYPSARARIE DFANEGGLDD EKGGKFSLFV GEQFAESDPY QEKVERTMVN  300
DGDLQKRGVC RQISDRFEDQ FDKQISRKEK DAGRQHSFYR GGGGQAGQRI QCASTRPGIP  360
NSIQGWEDTQ AAQSSDSQLP KNHEGLSSPP RQETTKEVGR NSEELGRASN SALEGNDRSL  420
SSTLIWIKRM ALDPGNPHMG EGVEGSGQNA EWVKDCASQA ERIRGLFCKR KEEIRLGGAE  480
PHLHQAKQNS TSYYYEELPR SDHPSVERFR ASRERVAQYG YPGSPGSHRS FHESSHYLQR  540
GSSPQSQHHW SSQTSQRLPR QSNFHSSYIE TAYSDYNNLI ERPRKRIPIG SDFQAHVPPE  600
KSVETKSSCQ REGPLGDETQ SSDEDDEESE RWFGKQVWPP PGFNSSSYPD MQVGVGRAIS  660
CTCLDPESID CVRTHVRQEK LRLEREVGQA FYTWKFDEMG ECVSDRWTKE EERTFKALVK  720
MNPPSLDKNF WEHLPEAFPG KKMKELVSYY FNVFMLKRRA VQNRLEGRQI DSDDDETELP  780
EGDSEDSEDY DSGEEPDEEA DEEVSEAEDD TDQLNESYGG GERSGKLLEH TGFCDLRGVN  840
LVYCSTNMDS LGEGPDSVHT NLCPSSDLNL ENEEQDYRSS RREERDVRLH SVQLTTKWTL  900
EQHDEEKHVE LPVTVLGEEE LQEVKTWEDP HWDEADNDRD VVKQDGDLDA TFSGKDDQGA  960
LSPIRNNSVQ KVIGFDDDQQ NSLSSCESEV WVGTMDTAPR KADDKLLSTN GMIQELFGDD  1020
SPEAHSPS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6XBB3	0.0	A0A2R6XBB3_MARPO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3014	4	5

Link Out ? help Back to Top
Phytozome	Mapoly0025s0094.1.p