PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0024s0094.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 460aa    MW: 50347.2 Da    PI: 7.4049
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0024s0094.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66.1e-181360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WTteEde+l ++++ +G+g+W+++ r+ g+ R++k+c++rw +yl
  Mapoly0024s0094.1.p 13 KGAWTTEEDEKLRKYIEAHGTGHWRSVGRKAGLQRCGKSCRLRWTNYL 60
                         79********************************************97 PP
2Myb_DNA-binding551.8e-1767109246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g++++eE++l+vd+++ +G++ W++Ia++++ gRt++++k++w++
  Mapoly0024s0094.1.p  67 GNFSPEEEKLIVDLHASFGSR-WSLIAARLP-GRTDNDIKNHWNT 109
                          89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.965860IPR017930Myb domain
SuperFamilySSF466891.03E-2911107IPR009057Homeodomain-like
SMARTSM007179.8E-141262IPR001005SANT/Myb domain
PfamPF002491.8E-151360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-231467IPR009057Homeodomain-like
CDDcd001671.45E-111560No hitNo description
PROSITE profilePS5129426.46761115IPR017930Myb domain
SMARTSM007174.2E-1665113IPR001005SANT/Myb domain
PfamPF002497.0E-1667109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2668115IPR009057Homeodomain-like
CDDcd001671.79E-1268111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MTRSVKDCED LRKGAWTTEE DEKLRKYIEA HGTGHWRSVG RKAGLQRCGK SCRLRWTNYL  60
RPDIKHGNFS PEEEKLIVDL HASFGSRWSL IAARLPGRTD NDIKNHWNTR LKKKLCDMGI  120
DPVTHKPISE ILLDLAGNQQ AARRCFSDSL LSKAVRQCAK PYTDSQEHSE GGKLREYHSK  180
AMDDMSLEEM YAESGSFSDM SGGFADPEIV NPEIVSPHVQ QIDNGENIGS EKGLSGGKAS  240
SHEQSSQSLC QQSSMMHGNP LVRSLSTSNS SNRLSPTLPI LGNLAIGRPG HQGEGYQGPD  300
LSGDFILQSK GDFFHLNKNA ARPDGTAASI GSHELIRAMN HSQGLHMLHP GHGHPCANFN  360
LGIGQSLANT RISEDIIGNL ASHSPRFIER FIAAHMEQGA SMPRPHHSSS GGGVYGNHIT  420
KPTDQLWLGD PTTIRNSNEG VNVNMDLGGG PSRVVLWDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27101154108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VJY70.0A0A176VJY7_MARPO; Uncharacterized protein
TrEMBLA0A2R6XBT20.0A0A2R6XBT2_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.14e-60myb domain protein 103