PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0023s0101.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 434aa    MW: 48126.9 Da    PI: 4.5516
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0023s0101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.5e-182875148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd +lv +v+++G g+Wk++ +  g +R++k+c++rw ++l
  Mapoly0023s0101.1.p 28 KGSWTSEEDAILVAYVTKHGEGNWKKVQKFAGINRSAKSCRLRWANHL 75
                         799*****************************99**********9986 PP
2Myb_DNA-binding52.98.5e-1781125147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g++T+eE++ ++++++qlG++ W++ a+ ++ gRt++++k++w+++
  Mapoly0023s0101.1.p  81 KGAFTPEEELTIIELHAQLGNK-WARMASQLP-GRTDNEIKNYWNSL 125
                          799*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.9912379IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-242378IPR009057Homeodomain-like
SuperFamilySSF466896.47E-3125122IPR009057Homeodomain-like
SMARTSM007176.5E-162777IPR001005SANT/Myb domain
PfamPF002492.1E-162875IPR001005SANT/Myb domain
CDDcd001671.22E-123075No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2579130IPR009057Homeodomain-like
SMARTSM007178.3E-1680128IPR001005SANT/Myb domain
PROSITE profilePS5129419.70680130IPR017930Myb domain
PfamPF002491.6E-1581125IPR001005SANT/Myb domain
CDDcd001673.32E-1183126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
METGVRDNPC PGPVIAPEGG AADKPLKKGS WTSEEDAILV AYVTKHGEGN WKKVQKFAGI  60
NRSAKSCRLR WANHLRPNLK KGAFTPEEEL TIIELHAQLG NKWARMASQL PGRTDNEIKN  120
YWNSLIRRTM RARTKAAIQI CSPEKRLMVH GLKNFQEGDQ GLSSSGESEC DPSAGNLFNV  180
NMTTDFSDMN GNGDCDVDLQ DCLMLAGMRD LPHDYDSAAE IIRTPEMVQL QPISGQRDMV  240
YNMHESAQGM YMDESCICVH ADDDLISMNA VDGHGQVGSM HDQPLGQQTV LFPQVSQESS  300
EAMQYYDPDP CYINQHDVQL AQFECYNPNP ENLSNIMSCK FDPIISAQTL PYSLDPDSPA  360
QIIPYNPDAD NFTLCNSVPK YSDAYLNYGG VIPAVLSSAV SHVERSLPAF FPSWNWNTFQ  420
SSGYNWPDLG LPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28261285106B-MYB
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VMZ10.0A0A176VMZ1_MARPO; Uncharacterized protein
TrEMBLA0A223LNC50.0A0A223LNC5_MARPO; R2R3-type MYB domain transcription factor 7
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.25e-53myb domain protein 101