PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0023s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | MYB_related | ||||||||
Protein Properties | Length: 570aa MW: 62445.4 Da PI: 4.6276 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.5 | 2e-10 | 447 | 489 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW +eE +++++a++q+G++ +++I + ++ +Rt+ q+k ++ k Mapoly0023s0090.1.p 447 ERWKAEETDIFYRAIRQFGTD-FDLIKNLFP-NRTRRQIKAKYKK 489 69*******************.*********.**********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.35E-10 | 437 | 489 | IPR009057 | Homeodomain-like |
Pfam | PF15963 | 1.2E-27 | 439 | 518 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-7 | 443 | 489 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.627 | 444 | 492 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4E-8 | 445 | 493 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-7 | 448 | 489 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MSMLSTLVDA LDVPEGASVP RAGVFQPKVK ARVRKGGGRG DAGASVAVKA PPAAPAAEKP 60 VSALPVASDT EPLDGNQNNA EENEISQPDF KVPDAPLSIE ENCVPEPLLP ITSSTTTLEE 120 TVGVIDSVST EVTKVTSPSR TSSIEPAIHS SPAAEDGSLL LQAEDDVIAA INAPEVSPPV 180 AVRSNFPLPS FTTATEENED TQGDALPRSG EPSSKGIVQP TNDEEGGPNG VIERARENKF 240 KKSARKVRKT EVATPTTSSK EAEVVDDDLE ETLVTLDDEL MAELGLQEED PPLDPAVQRR 300 KRKRAFPHAS SRPRRVQEDV GGSSKGGQSS KTNYDLSNPG TLPLREVIRR AENIERKKAK 360 DELAKKSLLD ISKPREREVV REAEPQRDVL SLAPQVQVIN GRIVVNEQSL TVGAYATSAQ 420 DTDKYTRVEE NASRLNYHTY SNRTVTERWK AEETDIFYRA IRQFGTDFDL IKNLFPNRTR 480 RQIKAKYKKE ENSNPRRVSD ALTYRPKDQS HYEDLLVRMK CDDLIQDNSD PFASILAYTA 540 DKVEKTDVTD KVEVEETQTE EEIPASIVE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5n9g_C | 3e-16 | 392 | 516 | 23 | 150 | Transcription factor TFIIIB component B'' homolog |
5n9g_H | 3e-16 | 392 | 516 | 23 | 150 | Transcription factor TFIIIB component B'' homolog |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 298 | 303 | RRKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6XCD5 | 0.0 | A0A2R6XCD5_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8075 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 4e-21 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0023s0090.1.p |