PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0019s0071.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 403aa    MW: 45291 Da    PI: 6.603
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0019s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.2e-141358146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         +g+W +eEde+lv++v+q+G ++W++I ++  + Rt+k+c++rw +
  Mapoly0019s0071.1.p 13 KGPWMPEEDEILVEYVRQFGARDWSSIRSKGLLPRTGKSCRLRWVN 58
                         79*************************8876677**********87 PP
2Myb_DNA-binding482.9e-1570110345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          ++++eE++l v+  ++lG++ W++Ia++++ gRt++++k++w 
  Mapoly0019s0071.1.p  70 KFSPEEEKLVVEMQAKLGNK-WAKIASCLP-GRTDNDVKNFWS 110
                          79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.417864IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-20962IPR009057Homeodomain-like
SMARTSM007171.4E-111262IPR001005SANT/Myb domain
SuperFamilySSF466893.41E-2712109IPR009057Homeodomain-like
CDDcd001675.62E-121560No hitNo description
PfamPF139211.5E-131678No hitNo description
Gene3DG3DSA:1.10.10.603.9E-1863115IPR009057Homeodomain-like
PROSITE profilePS5129416.79465117IPR017930Myb domain
SMARTSM007171.6E-1367115IPR001005SANT/Myb domain
CDDcd001679.10E-1270109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MKTIQNGDEV LRKGPWMPEE DEILVEYVRQ FGARDWSSIR SKGLLPRTGK SCRLRWVNKL  60
KPDLKRSGCK FSPEEEKLVV EMQAKLGNKW AKIASCLPGR TDNDVKNFWS TRQKRILRAL  120
QRPKMPSGST DAAADTSDLR KDPSITDYGA FQVHSPSGTG LVPSGFVTPF MFEDDNAFRE  180
PPGHLRLRHS VQPFNSLEVD DVLSLKLQDM VAGDSHFTDS DFSQCGRVLD DPRHGSVMYQ  240
HSPRMMITPR NARSVKRRPR SRRDARSCFE HHSGTDGGQD SVQMLPEIGL PLIQGNSRDF  300
GVPLSTEQQN NNYLDFLLQT EASSMHSSQM FSPELPSFLT NSQQWEKLPM LYSNDPSIQE  360
PDVKDSDSCS PDSVISGFAA DVFDSLEPLC PAAPEWWVAR LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26111155106B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256263RRPRSRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382208.11e-153myb protein-like
TrEMBLA0A1B4XVI20.0A0A1B4XVI2_MARPO; R2R3 MTB transcription factor DUO POLLEN 1
STRINGPP1S114_136V6.11e-148(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.13e-53MYB family protein