PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0018s0018.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 510aa    MW: 56372 Da    PI: 6.5636
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0018s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12283328454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h ++Er+RR+++N++f  Lr+++P+       K++Ka+ L  A+ +I++L
  Mapoly0018s0018.1.p 283 NHVQAERQRREKLNQRFYALRSVVPNV-----SKMDKASLLGDAIAHIQEL 328
                          6999**********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-11139IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.15E-13277333No hitNo description
PROSITE profilePS5088816.984279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-18282349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9283328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-18283349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-16285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006952Biological Processdefense response
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MAGIQTLLCV PSRSGVVELG STDLIAENLD IIENVKMVFC DMGESNCNSQ AIILNEDSAF  60
LPCPASPSLG SIHGSTRHLL LDRGPDASSS FRPIHLDKMN SSVCTNVDSF DYLFSEDFAF  120
GDVSIDNEKE LQSASTFTGS YRGKVSCQED KISSVGIAKK SLPAGQAQNL TRGMETGEIL  180
NPPELRQGRD ILQVNDVAST RIKEEGTIKT SKHKLSSSLK SQHPEGIGTL GSAYVRSSIE  240
SEQDIDSEAE VSYKEVECSF TVGQKPPRKR GRKPANDREE PLNHVQAERQ RREKLNQRFY  300
ALRSVVPNVS KMDKASLLGD AIAHIQELHS KVQEMEFQIK GLEAQAKLLM EKSADPESSR  360
QCFNNGSREY LHPSTVLTGT SASSASRISM DVKPTIAVHT LGHEAMIRLH CMKESYALAN  420
LMFTLEELKL EVQHANLSIL EDSMVHIILV KVSFVYLRSV KFFVCCFFYL KGRKNVISSS  480
WEDGLDFTRS GIHSSVNWPV VLSRIYVNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27278348376Transcription factor MYC2
5gnj_B2e-27278348376Transcription factor MYC2
5gnj_E2e-27278348376Transcription factor MYC2
5gnj_F2e-27278348376Transcription factor MYC2
5gnj_G2e-27278348376Transcription factor MYC2
5gnj_I2e-27278348376Transcription factor MYC2
5gnj_M2e-27278348376Transcription factor MYC2
5gnj_N2e-27278348376Transcription factor MYC2
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00086PBMTransfer from AT4G17880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XFE70.0A0A2R6XFE7_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37331224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.16e-50bHLH family protein