PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0018s0011.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family BBR-BPC
Protein Properties Length: 364aa    MW: 40343.9 Da    PI: 9.295
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0018s0011.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind244.95.5e-757236320301
            GAGA_bind  20 lkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla......salpvgvqvls 103
                          + ++ +l+l+  iaerda+i ern a++ekkaa+ erd a+l+ d a++er+ alverd +++al  v+ ++       +      + ++
  Mapoly0018s0011.2.p  72 ICDQTALKLVKAIAERDAAILERNSAIAEKKAACVERDAALLRCDLAFSERDSALVERDAAVAALGAVRAGKFatftewT-----RHGSP 156
                          45667899*********************************************************999988665444332.....23333 PP

            GAGA_bind 104 gtksidslqq.lse.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad... 184
                          ++ + ++lq  + +      +++  a+ + ++    ++  +e  ++++ + +++++qr  + k+k   k +k++  s +k  +e++    
  Mapoly0018s0011.2.p 157 NAVTSKTLQPpVVDsspfsVDFASAAACQWKSAVGRTNICSEYIQKQSMAGNVRESQRDLRSKRKIG-KDTKQGFLSSRKRPPEQKLliy 245
                          3333332222211123333334443333444444444444444444444444444444444444333.4444444444444444433333 PP

            GAGA_bind 185 erskaekksidlvlngvslDe.stlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273
                          +r + ++++ + ++ +   De     +P CsCtG+ + CYkWGnGGWqSaCCtt iS+yPLP+++k+r +R+agrKmS gaf+kl+ekL+
  Mapoly0018s0011.2.p 246 QRENLDQNERGSSVTEEVADEnICNSIPYCSCTGVNQPCYKWGNGGWQSACCTTMISMYPLPMNPKKRSSRLAGRKMSAGAFEKLVEKLT 335
                          556666666666555555555056689*************************************************************** PP

            GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301
                           eG ++ +p+DLkdhWAkHGtn++vt+r
  Mapoly0018s0011.2.p 336 LEGVNVRCPIDLKDHWAKHGTNRYVTLR 363
                          **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.9E-5959363IPR010409GAGA-binding transcriptional activator
PfamPF062176.9E-6859363IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVTTSTGLKY VVETLRERRF SQDSFWNEGL PDFVSKFAPV TQGSSLARGP FLDDLSYSMD  60
DEGRVGVRRR MICDQTALKL VKAIAERDAA ILERNSAIAE KKAACVERDA ALLRCDLAFS  120
ERDSALVERD AAVAALGAVR AGKFATFTEW TRHGSPNAVT SKTLQPPVVD SSPFSVDFAS  180
AAACQWKSAV GRTNICSEYI QKQSMAGNVR ESQRDLRSKR KIGKDTKQGF LSSRKRPPEQ  240
KLLIYQRENL DQNERGSSVT EEVADENICN SIPYCSCTGV NQPCYKWGNG GWQSACCTTM  300
ISMYPLPMNP KKRSSRLAGR KMSAGAFEKL VEKLTLEGVN VRCPIDLKDH WAKHGTNRYV  360
TLR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391178.18e-68serine/threonine-protein kinase 24-like
TrEMBLA0A2R6XFD80.0A0A2R6XFD8_MARPO; Uncharacterized protein
STRINGPP1S56_2V6.13e-67(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.22e-55basic pentacysteine 4