PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0015s0058.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

NAC

Protein Properties

Length: 337aa MW: 38120.2 Da PI: 5.866

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0015s0058.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.1	4.7e-55	35	162	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtd elv++yL+ kv+++++++ e+i+ev+++k+ePwdLp+k+k +e+ wyfFs rd+ky+tg r+nrat++gyWkatgkd+ Mapoly0015s0058.1.p 35 LPPGFRFHPTDFELVDYYLTIKVKNNQCHF-EAIDEVNLNKCEPWDLPAKAKVGENTWYFFSLRDRKYPTGMRTNRATDAGYWKATGKDR 123 79************************99.89***********99999********************************* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ev++ +++lvg+kktLvfy+grapkgekt+W+mheyr+ Mapoly0015s0058.1.p 124 EVMTPnNDRLVGMKKTLVFYTGRAPKGEKTNWIMHEYRI 162 977888*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.27E-61	30	180	IPR003441	NAC domain
PROSITE profile	PS51005	58.54	35	180	IPR003441	NAC domain
Pfam	PF02365	2.4E-27	36	162	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MPDDIANYNF QDFCTIPKVE VVDERDDGSI MGSRLPPGFR FHPTDFELVD YYLTIKVKNN 60 QCHFEAIDEV NLNKCEPWDL PAKAKVGENT WYFFSLRDRK YPTGMRTNRA TDAGYWKATG 120 KDREVMTPNN DRLVGMKKTL VFYTGRAPKG EKTNWIMHEY RIEGESSPVT EWVVCRVFKK 180 NAACRKSAME CHPGGSNYQL ELDEPEGNFD HQAGTYLPAL LDSPGHHHSQ QVPSSHKPGY 240 GGFSGTPSSA EYHQGGGATY HAHHEFEQQQ QQHDLGQKLQ KSKSFSLADF STFTNWAVRR 300 DMQVADTLEN LVGNWDAAGP ESSNNSEEWI WDPPAG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-50	35	186	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-50	35	186	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-50	35	186	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-50	35	186	17	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-50	35	186	17	171	NAC domain-containing protein 19
4dul_B	2e-50	35	186	17	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024371500.1	6e-75	NAC domain-containing protein 92-like
Refseq	XP_024371501.1	6e-75	NAC domain-containing protein 92-like
Refseq	XP_024371502.1	6e-75	NAC domain-containing protein 92-like
TrEMBL	A0A176WES4	0.0	A0A176WES4_MARPO; Uncharacterized protein
TrEMBL	A0A2R6XGK6	0.0	A0A2R6XGK6_MARPO; Uncharacterized protein
STRING	PP1S288_4V6.1	2e-74	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-69	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Mapoly0015s0058.1.p