PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0015s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | bHLH | ||||||||
Protein Properties | Length: 463aa MW: 51138.9 Da PI: 7.3563 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.8 | 6.2e-11 | 265 | 305 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N+++ Lr+++P+ + K++Ka+i A++Y+ +L Mapoly0015s0003.1.p 265 ERKRRKKMNDGLYSLRSIVPNiS------KMDKASIIGDAIKYVMEL 305 9********************66......**************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.869 | 256 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-16 | 260 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-14 | 262 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.72E-11 | 264 | 310 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.7E-15 | 264 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-8 | 265 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00159 | 397 | 451 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MHSIVGRGRR PAFREEQGWK EHSSPHTPLS PNFHADPLFG TPSGSLQDIL RSVHMVEGSA 60 FVSVPKSSGS QAPPDIIAPQ QQQQVSSTAR NVSVDAPVID DGLGKLQRKQ LQCHTSSSWD 120 HNMRNEHVFE GYPHVGLADI SNTQLQLDSF KPVGTWTDTP GADHEQQWTD LRRSSKTTML 180 SPGPNLDSGT CQPSVWRERW SDSSRVHASS HQERHRAAAP AAGAAAAAAH LEESTDGGSD 240 PMDEKNSRRF SNTAGYCSSR NLFSERKRRK KMNDGLYSLR SIVPNISKMD KASIIGDAIK 300 YVMELERQVK ELEGEMELDE QRKNKINSSS DTLGSLAATG VQHGGDAAAQ NDKDVDWNKN 360 SGGNVSKLDT KDQPNVTLEL SKMKTGMYNL RMFYQQQPGI FMHMTQAIES LDLNILNSHV 420 STCDGYVVHS MIAKDALQVP GPRTLTHLKQ RNIRQTNGEN YF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6XGE3 | 0.0 | A0A2R6XGE3_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 6e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0015s0003.1.p |