PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0015s0001.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 484aa    MW: 52882.7 Da    PI: 8.289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0015s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-08270320254
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ h +rEr RR +++  + +L +l+P  +   +  K +  +i+  A +Y+k++
  Mapoly0015s0001.1.p 270 KAEHVQRERERRIQLRAMYKTLDTLVPAqS---RTAKRDRTTIVNDALNYVKEM 320
                          67899***********************55...******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.299268320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-9268324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.03E-7268325No hitNo description
SuperFamilySSF474597.46E-12269337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-6270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-4274326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MSEMFSWINN ACADSGSTFS TFVSNDSIVA GQDFGRMLGS VSREVHLNEK SMYRLIPWAE  60
NAICFRPGTA EGGNQLDDAH GFWSTYAGAV QDQQSKQQSA TSKLDSVPAT PPLLSDIVTL  120
VSATTDRDKV GQLPNEFATF IDSLPIPYGS SSTGIQGQFS FGANSTLSAA VTETEPSIRP  180
KIEIGNSEAH PKLRALHSVC IEAKDDQVKK ILSKCGKWTQ SAAANKSLQW TTVGLEKPKV  240
HGRTKGDLSK KTEGPGRQHH KSFRPVPSEK AEHVQRERER RIQLRAMYKT LDTLVPAQSR  300
TAKRDRTTIV NDALNYVKEM RKKLEMLQAY KSKPVMSLAL SELIAQNIEK RNNQASQLIT  360
SGVRGKTSSP TSNSTVDIEH TEGDIGTDGT AGDTSVVLVT PEVNVFMASS DQVVININCG  420
PRPDLLSRIL KALDLLHLDV SHYTFSRLCT QFVNCHFAAK IRTSADTTRL TEIITEVLGD  480
SLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VPE20.0A0A176VPE2_MARPO; Uncharacterized protein
TrEMBLA0A2R6XGF20.0A0A2R6XGF2_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-09bHLH family protein