PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0014s0223.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family SBP
Protein Properties Length: 739aa    MW: 78015.7 Da    PI: 7.8909
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0014s0223.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.44.1e-43331408178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cqv+gC++dls+ak+yhrrhkvCe+hska+ v+v+gleqrfCqqCsrfh l+efDe+krsCrrrLa+hnerrrk+q+
  Mapoly0014s0223.1.p 331 RCQVDGCRQDLSSAKDYHRRHKVCEMHSKASRVMVAGLEQRFCQQCSRFHVLTEFDEGKRSCRRRLAGHNERRRKPQP 408
                          6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-35325393IPR004333Transcription factor, SBP-box
PROSITE profilePS5114134.026329406IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-41330410IPR004333Transcription factor, SBP-box
PfamPF031101.6E-32332405IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MEDAKNSGTV QSPRYCNGSQ SKSYSLSNQQ QQQQHQHQQQ QQQQQQHLKD SSPRSASVVG  60
QQPPFSRLHP LMAPQHTSTT TTSNSVGQSQ SPHGAWASTP SDWDSAPNMS ETMEATANGS  120
AQDYHGVRSS GSDWDVKISP WDWEQMSTIC APGRGGGGGG GGGGGEGAHS SKGSYSLSQS  180
SESGSIGGGG SGGVGAANRV TLPKIEADLG NGGGSLESNR IVNLVVDRRA PPQQSSAASI  240
DDHRNRLLLG LGGVDDVSSE ERRRYCQEHC NGGTAKIGAA DAMIGLNLGR REYFEDAVAP  300
ARACGGAPTP FAVCPPGKKQ RVQSPGVQVP RCQVDGCRQD LSSAKDYHRR HKVCEMHSKA  360
SRVMVAGLEQ RFCQQCSRFH VLTEFDEGKR SCRRRLAGHN ERRRKPQPES AAIASTGSSA  420
ALHAESGSHA TSVNGEEDKR GTNGLAERGS YMPSHRTPGS SSTSVEENSD DQSGSMGTTL  480
KLNQGRSLWQ GISRVEEAAG LACQVPCGER QQPYLSSATT HRMLSVMQSP KGVHQFLLEG  540
SGGPGLTLAS TSGTTSVLST LESPTSTSVS GLSDSGRALS LLSSQAWGSR GGAPGSVSLD  600
LSSQPSVALL DRLISEKTGV PFSPRRQPSP YHSASATAEN LFPLQPHSMR VEAREQHRSF  660
ISGMNLVGSG FDGGMLALMQ GNPDFLAGYG AVSVAQRPTI DLMRHPSPQS HNSSTHPSGV  720
QSAEFSALRS YESFESLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-33324405584squamosa promoter binding protein-like 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XI050.0A0A2R6XI05_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-42squamosa promoter binding protein-like 2