PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0014s0196.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 1075aa    MW: 114719 Da    PI: 7.3969
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0014s0196.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-091535626
                         -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                         Cr++a +GtC +Gd+C+FaH 
  Mapoly0014s0196.2.p 15 CRYWATSGTCFFGDQCNFAHN 35
                         ********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.286937IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-41036IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-61338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-71538IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-61535IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.8974776IPR000571Zinc finger, CCCH-type
SMARTSM003564.84975IPR000571Zinc finger, CCCH-type
PROSITE profilePS500118.4857521074IPR000719Protein kinase domain
CDDcd001801.00E-8759901No hitNo description
SuperFamilySSF561127.9E-12761955IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.207.8E-7767890No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1075 aa     Download sequence    Send to blast
MSAPHQKLPA SNITCRYWAT SGTCFFGDQC NFAHNTADRA TSGRAVPKRE KACKELLLTG  60
YCKNENDGCE YNHSIPGVTR SGPPTPTTTG ASGSATSSTW SASTSRAATS SAPGTVAAAA  120
IRNKGLPVTA PAFVPAAVAA AQRASLTAWG GLTPGGGSLL TNVNQSPAFF TSTSLTVLSS  180
PSQNGTLSPA STVVGNNSST STSLSVVTRS LETEASGSSE GLPGPSFVSG SLPASLNAQP  240
FVPSGLHASS IVNGVTSASA GTSSSSSIGN ANAAPYVPSG VASAIGAPPY IPKAKQHVLS  300
GVVGAGRPMP EQSHLGLGGI PQQLQLRQQL SQLHMQQQQA AHMLAVAARN MGGNGMSSPY  360
MNMDVPMVMP PFRLPDGDDP ALGMTAMSPP NPAFVIPLTR GSNGSVPVLP APEALASMGI  420
VGDGSGGLQV GSGYPSQMSY GSSMQSQSSV RVQHMHQHMQ KLQMQHHPPP LQLSGQNHPF  480
TLRTTQNVDN PKQQYGVSGT DKQHLNLASD LGTANDGRNP SSSSATTPTH FAGDSQAQDH  540
LPSLSGEMDS QQTIVSDSSS GHQQQQQQQQ QQQQTPQQPL QSPAQLLQSA KQRQQQLQQQ  600
QMLQHQQHMQ LMQQRPQPSN QRPITSPVQH QQRLPFRSPS PVPNVSTVAA TTHGGATYFH  660
GPGQGISSLP HVSQGGPFSG SAGRVEGRIR GQSNVGIVPL GPRFMSDHLR EELRRRHALI  720
HAQLDTDQNI INLPEMVQRF HTLYPLEEVN RDDDSPSCAF GVRSMTFKGI SSSDGIAYAI  780
RRIDSREVVP NPELAASAAE VVERWSPLAR HPHIVSIREC FVSREIEDSA ALFFVHDYYP  840
GSVTLEAMHL HQEQAGGVAP MMISEEQLWS YMVQLAAVLR AVHSAGLFFR PGGLHPSKVI  900
LPTRGRLRVS SAGILDVLNG EATDDPRVFQ REDLAGFGRL ILSLACGSMH NASLDFMAAH  960
YSADLVHVTN ALLASSLDKS DGVGISNIRQ LHHVLTERMF GEIEQLHLQN DELMSEISKE  1020
TENGRLLRIL IKLGMTNELP EDDIESGWSE TGDRYLLKLF RDFVFHQTIK GRRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4cyi_A3e-48704106817368PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN, PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-L PROTEIN
4cyi_B3e-48704106817368PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN, PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-L PROTEIN
4cyi_C3e-48704106817368PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN, PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-L PROTEIN
4cyi_D3e-48704106817368PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN, PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-L PROTEIN
4cyi_E3e-48704106817368PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN, PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-L PROTEIN
4cyi_F3e-48704106817368PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN, PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-L PROTEIN
4cyi_G3e-48704106817368PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN, PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-L PROTEIN
4cyi_H3e-48704106817368PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN, PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-L PROTEIN
4cyj_A3e-48704106817368PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN
4cyj_B3e-48704106817368PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN
4cyj_C3e-48704106817368PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN
4cyj_D3e-48704106817368PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378278.10.0PAN2-PAN3 deadenylation complex subunit pan3-like isoform X4
TrEMBLA0A2R6XHW80.0A0A2R6XHW8_MARPO; Uncharacterized protein
STRINGPP1S242_6V6.10.0(Physcomitrella patens)