PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0014s0183.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

GRAS

Protein Properties

Length: 850aa MW: 94461.5 Da PI: 5.7771

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0014s0183.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	448.1	5.8e-137	477	842	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 lv+lLl+cAeav++++l+l++ l a+l elasp+g++mqR+aay+te+La+r +r ++++y+ lp + + +++++l+a++++++v+P+ Mapoly0014s0183.1.p 477 LVNLLLACAEAVATKSLSLVNPLFAQLGELASPEGTSMQRVAAYYTEGLATRCSRLWPQIYQPLPYNLDL--SEEDSLSAFHILNHVCPY 564 689***********************************************************988886..58999********* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 kfsh+taN+ Il+a+e+++rvH+iDfdi+qGlQWpaL+q+La+Rp+gpp ++R+Tgvg+ ke ++ tg+rLa+fAe+l+++fef+ Mapoly0014s0183.1.p 565 TKFSHFTANEIILQAFEQCDRVHVIDFDIKQGLQWPALFQSLAARPGGPPsHVRVTGVGD----CKEDVQDTGDRLAEFAEALDLQFEFH 650 ******************************************99888*****....************************ PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl...erflealeyysa 266 + v ++led++l++L+vk++E++aVn+ lqlhr+l ++ es ++++L l+ s++Pkvv vveqea+hn++ F rfle+l+yy+a Mapoly0014s0183.1.p 651 A-VIDKLEDVRLWMLHVKEKEVVAVNCLLQLHRTL---HDAESGIKDMLGLIMSTKPKVVAVVEQEASHNGPFFEgrsPRFLESLQYYAA 736 .7*****************************...55555556************************733358****** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 +fdsl+ ++p++s +r+kvE++ ++rei+n++aceg er+erhe+ ekWre +++a F++vpls++a +qaklll++++ + y++ e+ g Mapoly0014s0183.1.p 737 VFDSLDLNMPSDSMARMKVEQF-FAREIRNIIACEGPERVERHERIEKWREHMTQARFESVPLSKRAKSQAKLLLEMFACKSYTLSEDAG 825 ******************.****************************************************999**** PP GRAS 357 slvlgWkdrpLvsvSaW 373 +l+lgW++rpL+++SaW Mapoly0014s0183.1.p 826 ALTLGWRSRPLFTASAW 842 *************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.32	451	823	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-134	477	842	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MPSAHCAEAP DLLLQRQHAP THSLARFAAS KRARRRTRGN LHARSLRWIQ PDEENDLIDR 60 RIFRVLWRLN NSERAELDAA EFRSRIESDE AISSSSSSSS SSRTSRHDEK EPKRGRTSRS 120 ELRGLRRIPR LHVSARPHLA LALRLAAWNC GGAAVRAVMR EGCTALMGSS VHGANGYGFL 180 DDASFQHQDM PKIQCLDQHM VFYPSSPGPT PSMSMSRDQR CKYAKPESEL VIHVLDDRAD 240 EAEVCHARDL APWPSDEADR ARGPDSDYET PSPALPVEPS PSSSAMASPA VSRSHSHSHS 300 PDIKRNTPEP RSVLDLAISP RASARSSVAN FGFPNGVLDV HDSFLNDFHR VDSGHLLALV 360 EEDSSRWGDP PTNSGDESLS QQNSQLWMDS FIEDFGVSST PTSLPGLETE GEEARTNSFD 420 TPTSTPSEGH KSSTSDQDQS EEEGNEDATA EEGSPPPQQA NSEPPTRKPH REVGLELVNL 480 LLACAEAVAT KSLSLVNPLF AQLGELASPE GTSMQRVAAY YTEGLATRCS RLWPQIYQPL 540 PYNLDLSEED SLSAFHILNH VCPYTKFSHF TANEIILQAF EQCDRVHVID FDIKQGLQWP 600 ALFQSLAARP GGPPSHVRVT GVGDCKEDVQ DTGDRLAEFA EALDLQFEFH AVIDKLEDVR 660 LWMLHVKEKE VVAVNCLLQL HRTLHDAESG IKDMLGLIMS TKPKVVAVVE QEASHNGPFF 720 EGRSPRFLES LQYYAAVFDS LDLNMPSDSM ARMKVEQFFA REIRNIIACE GPERVERHER 780 IEKWREHMTQ ARFESVPLSK RAKSQAKLLL EMFACKSYTL SEDAGALTLG WRSRPLFTAS 840 AWAPTKLSS*

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MPSAHCAEAP DLLLQRQHAP THSLARFAAS KRARRRTRGN LHARSLRWIQ PDEENDLIDR  60
RIFRVLWRLN NSERAELDAA EFRSRIESDE AISSSSSSSS SSRTSRHDEK EPKRGRTSRS  120
ELRGLRRIPR LHVSARPHLA LALRLAAWNC GGAAVRAVMR EGCTALMGSS VHGANGYGFL  180
DDASFQHQDM PKIQCLDQHM VFYPSSPGPT PSMSMSRDQR CKYAKPESEL VIHVLDDRAD  240
EAEVCHARDL APWPSDEADR ARGPDSDYET PSPALPVEPS PSSSAMASPA VSRSHSHSHS  300
PDIKRNTPEP RSVLDLAISP RASARSSVAN FGFPNGVLDV HDSFLNDFHR VDSGHLLALV  360
EEDSSRWGDP PTNSGDESLS QQNSQLWMDS FIEDFGVSST PTSLPGLETE GEEARTNSFD  420
TPTSTPSEGH KSSTSDQDQS EEEGNEDATA EEGSPPPQQA NSEPPTRKPH REVGLELVNL  480
LLACAEAVAT KSLSLVNPLF AQLGELASPE GTSMQRVAAY YTEGLATRCS RLWPQIYQPL  540
PYNLDLSEED SLSAFHILNH VCPYTKFSHF TANEIILQAF EQCDRVHVID FDIKQGLQWP  600
ALFQSLAARP GGPPSHVRVT GVGDCKEDVQ DTGDRLAEFA EALDLQFEFH AVIDKLEDVR  660
LWMLHVKEKE VVAVNCLLQL HRTLHDAESG IKDMLGLIMS TKPKVVAVVE QEASHNGPFF  720
EGRSPRFLES LQYYAAVFDS LDLNMPSDSM ARMKVEQFFA REIRNIIACE GPERVERHER  780
IEKWREHMTQ ARFESVPLSK RAKSQAKLLL EMFACKSYTL SEDAGALTLG WRSRPLFTAS  840
AWAPTKLSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-93	463	844	5	380	Protein SCARECROW
5b3h_A	5e-93	463	844	4	379	Protein SCARECROW
5b3h_D	5e-93	463	844	4	379	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6XHU6	0.0	A0A2R6XHU6_MARPO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5507	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	1e-119	GRAS family protein

Link Out ? help Back to Top
Phytozome	Mapoly0014s0183.1.p