PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0013s0145.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB_related
Protein Properties Length: 1229aa    MW: 135749 Da    PI: 9.7573
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0013s0145.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.4e-084681340
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                         +W++++ e++++a +++G++ W+++a  m  +Rt +++
  Mapoly0013s0145.1.p 46 PWSKDDLEQFYQAYRKFGKD-WSKVAGSMS-KRTVEMV 81
                         8*****************99.*********.9**9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.56E-94291IPR009057Homeodomain-like
SMARTSM007179.9E-54391IPR001005SANT/Myb domain
PfamPF002492.7E-64681IPR001005SANT/Myb domain
CDDcd001671.00E-54681No hitNo description
Gene3DG3DSA:1.10.10.609.5E-44681IPR009057Homeodomain-like
SMARTSM011354.1E-53661762IPR033471DIRP domain
PfamPF065843.0E-31661761IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1229 aa     Download sequence    Send to blast
MAARRPRTSG RVTSKNNPGV VERDEDAGER GGKLRKRKMS DMLGPPWSKD DLEQFYQAYR  60
KFGKDWSKVA GSMSKRTVEM VEALYSMNKA YLSLPEATTS PEVLIAMMTD HYNILEERRS  120
EEDEESSEEF ANSDRSHQTQ SHQTSSRLRA RVTSSSNPGT LSYGGPSPAK KPRSAAASRP  180
RIVGKRTPRY PNGSALEPRM KTKVVANKAL QEETSDEDYD FSKAAQTLVT ASQRAASPLV  240
AAHTPSRRNS RAALQNGHSR EAPSKAESGG SGPKHTASNS GEVGHDGSHD SKERRNKGSR  300
TATADETDVV DGVKRRPSDG KGKWKKPLPK RLKLQKLEKY DDAKEECSQS GTQDADTKEE  360
DEERQMSGQK KMRHLSQRTK KRSRQLFSGE NQSTALDTLA TLADLSLAGL LPSPTGDSDP  420
GTSSFREKIE DKILKRKEFS PPKCAGSVAS LNDNAEKRED RKEDAEEERG IEESEKDDSH  480
IVTKPGQLSA SPTDSRKRKR MTAIEKMESQ GKVVAEEINQ RKPDTEVPPA KIEISAALKP  540
RSKPKRTLSA KGPLKQGIKA NKTGETSGVD QNQLAQGHGQ SVTTDEGTLP LKLRSKKKGL  600
AEKGPVNRFK EVSTDGLNGG IERDAAHCPH ATADLGAFNT KARLIHCLSP KVRRWCMFEW  660
FYSAIDLPWF ARNEFVEYLN HAGLGHVPRL TRVEWGVIRS SLGKPRRLSQ RFLQEEREKL  720
EAYRESVRTH YHELRGGLRE GLNSDLARPL TVGQRVIAKH RRTKQIHDGS ILTVDRNRCR  780
VQFDRPELGV EFVMDTDAMP VHPLENMPEM MRRKRIILDP LDRTAEDLKH EAKRVRVSAA  840
GAARAALNER LERPASLPGI PSFSPFFLNN LTKRAQDDSV DSVRLAKAAT NEAVAATKQA  900
IMSQPCTPGQ SQARETDIRT LVDLGNALNK KEALVVELRR MNDEAVSYKG SDMFQRQYAT  960
IILQLKEVNE QVYEALKHLR HRNKYEDSAL PPWHRPAAAQ ATPGRPSFVA GPLEPGPPLP  1020
EVAASAKKHA KALVSVAMET LYNCKYEEAN ELVSAALASV ERKPLPTITT VGTPKTEGLS  1080
GASTGHSVVA PAVAMEVDEV IKPAAPPLGE TVSTVKTEDV ATKEPNPSSR TQSEEDEYLT  1140
DLMANCVTTL MMVQTLTEGQ FSPAEVIQTL DTALESLRPR TAQNHLIFKE IEQQLGYVKT  1200
QILTPIQIPI QSGIPSPTEG LITQPKGV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XIN80.0A0A2R6XIN8_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24791321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-111DNA binding