PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0012s0190.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 1837aa    MW: 206011 Da    PI: 9.2264
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0012s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.9e-0916181644127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                           ykt+lC +f+    C+yGd+C+FaHg+
  Mapoly0012s0190.1.p 1618 YKTRLCLRFSTPEGCRYGDKCRFAHGK 1644
                           9************************96 PP
2zf-CCCH28.52.6e-0918021826126
                           --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                           +kt+lC++f + GtC + drC+FaHg
  Mapoly0012s0190.1.p 1802 FKTKLCKNFVQ-GTCTFADRCHFAHG 1826
                           69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027362.8E-41045IPR004009Myosin, N-terminal, SH3-like
SuperFamilySSF525404.54E-28532784IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM00242055732IPR001609Myosin head, motor domain
PROSITE profilePS51456275.70361731IPR001609Myosin head, motor domain
PfamPF000632.0E-25163719IPR001609Myosin head, motor domain
CDDcd01384075719No hitNo description
PRINTSPR001934.3E-6091110IPR001609Myosin head, motor domain
Gene3DG3DSA:3.40.50.3005.0E-4143158IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR001934.3E-60148173IPR001609Myosin head, motor domain
Gene3DG3DSA:3.40.50.3004.3E-4159183IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR001934.3E-60195222IPR001609Myosin head, motor domain
Gene3DG3DSA:3.40.50.3005.0E-4236277IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.3E-4278325IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3005.0E-4370413IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR001934.3E-60427455IPR001609Myosin head, motor domain
PRINTSPR001934.3E-60480508IPR001609Myosin head, motor domain
SMARTSM000153733755IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.803734763IPR000048IQ motif, EF-hand binding site
PfamPF006120.0021736754IPR000048IQ motif, EF-hand binding site
SMARTSM000151.0E-4756778IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009611.317757786IPR000048IQ motif, EF-hand binding site
PfamPF006129.5E-6758777IPR000048IQ motif, EF-hand binding site
Gene3DG3DSA:4.10.270.105.3E-4760800IPR027401Myosin-like IQ motif-containing domain
SMARTSM000150.0021781803IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.126782808IPR000048IQ motif, EF-hand binding site
PfamPF006120.0011784802IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.08E-16784882IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000154.3E-4804826IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.328805834IPR000048IQ motif, EF-hand binding site
PfamPF006129.1E-4806826IPR000048IQ motif, EF-hand binding site
Gene3DG3DSA:1.20.5.1901.1E-6808849No hitNo description
SMARTSM000151.0E-5829851IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.438830856IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-5831851IPR000048IQ motif, EF-hand binding site
SMARTSM000150.046852874IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791853882IPR000048IQ motif, EF-hand binding site
PfamPF006120.0053854874IPR000048IQ motif, EF-hand binding site
CDDcd15475011161502No hitNo description
PROSITE profilePS5112656.19711651479IPR002710Dilute domain
PfamPF018436.2E-2413541458IPR002710Dilute domain
SMARTSM011321.2E-4113541461IPR002710Dilute domain
SuperFamilySSF902297.2E-816161649IPR000571Zinc finger, CCCH-type
SMARTSM003560.007816171644IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-1316181650IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.38916181645IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-616181644IPR000571Zinc finger, CCCH-type
SMARTSM003223.5E-1217151785IPR004087K Homology domain
SuperFamilySSF547914.97E-1317151788IPR004088K Homology domain, type 1
PROSITE profilePS5008415.59817161780IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.6E-1417181786IPR004088K Homology domain, type 1
PfamPF000136.3E-1017201781IPR004088K Homology domain, type 1
CDDcd001053.21E-1217271780No hitNo description
SMARTSM003566.5E-718011827IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.21618011828IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-1318011831IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-718011832IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-618021826IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007015Biological Processactin filament organization
GO:0009860Biological Processpollen tube growth
GO:0046740Biological Processtransport of virus in host, cell to cell
GO:0051640Biological Processorganelle localization
GO:0016459Cellular Componentmyosin complex
GO:0000146Molecular Functionmicrofilament motor activity
GO:0003723Molecular FunctionRNA binding
GO:0003779Molecular Functionactin binding
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1837 aa     Download sequence    Send to blast
MATANISIGS QVWVEDSNLA WVEAEVLDFD GKQVKARTIN GTTVVASVSN VHAKDSDSQP  60
GGVDDMTKLA YLHEPGVLYN LASRYELDEI YTYTGNILIA VNPFAKLPHL YDNHMMEQYR  120
GAPLGELSPH VFAVADSSYR AMINEKRSQS ILVSGESGAG KTETTKLIMQ YLAYMGGRAN  180
TDGRTVEQQV LESNPLLEAF GNAKTSRNDN SSRFGKFVEI QFDRNGRISG AAVRTYLLER  240
SRVVQIADPE RNYHCFYQLC ASPEDSEKYR LGDPRSFHYL NQSPVFELNN VNNGREYIKT  300
RRAMDIVGIS PEEQEAIFRV VAAILHLGNV EFTTGKEADS SIPKDEKSKF HLSVVAELLR  360
CNSKSLLDSL CERIIVTRDE NITKTLDAYS ATTNRDTLAK TIYSRLFDWL VDKVNKSIGQ  420
DPDSTTLVGV LDIYGFESFK VNSFEQFCIN LANEKLQQHF NQHVFKMEQE EYTKEAINWS  480
YIEFVDNQDV LDLIEKKPVG IIALLDEACM FPKSTNETFA TKLFQSFNRN KRFSKPKLSR  540
TDFTISHYAG DVTYQTDLFL DKNKDYVVAE HQALLGSSSC SFVAGLFPPP SDESSKSSYK  600
FSSIGTRFKQ QLQALMETLN QTEPHYIRCV KPNMVNKPGR FENVNVLQQL RCGGVLEAVR  660
ISCAGYPTRR TFDEFIDRFG LLAPELLNGN YDEKTVTEKL LEKMGLVNFQ VGQTKVFLRA  720
GQMATLDGKR SELLSNAART IQRQVRTFLA RREFTKKRKA AVKIQACWRG RMARKQYEDL  780
RKEAAAVCIQ KHVRRWLAQK SYAKTRKAAI FVQAGVRGMI ARKEFRRRRQ TKAAIIIQTR  840
FRGYKARSDY QKLRKAAVVF QCQWRGRVAR QALKKLKMAA KETGALQAAK TMLEKRCDEL  900
TWRLQLEKRM RTDLEEAKAQ EISKLQASLQ DMQLQVQAAS DSLIQEREQN KMALGQAVLA  960
AERVPSVEVT DAKVEKLVAE CDRLKALVET LEARAAEATE AEKKYAAAKK ESDERLLRAE  1020
EAEAKIEQMQ EAVHRLEEKL QNMESENQVL RQQTLVLSPT KGLGSRFKTT VFQRSPDNGY  1080
LANGEHRQAT LETPSTAQIE REHSEAEQRR QKLLIDRQQE NQDALLQCVM QDVGFSHDRP  1140
VAACIIYKSL LQWRSFEAER TNVFDRIIQT IGTAIESQEN NDVLAYWLSN TSTLLFLLQR  1200
TLKASGAAGG TPQRRRPSSV TLFGRMTQGF RSSPSGGVSF GNGGIMGGLE VLRQVEAKYP  1260
ALLFKQQLTA YVEKIYGMIR DNLKKEISPL LSLCIQAPRT SRATLSKVAS RTSPIANMST  1320
QQVLSSHWHS IISSLSSLLS TLRANHVPPF LVRKLFTQIF SFINVQLFNS LLLRRECCSF  1380
SNGEYVKAGL AELEHWIYDA TEEYAGSSWD ELKYIRQAVG FLVIHQKPKK SLDEITHDLC  1440
PVLSVQQLYR ISTMYWDDKY GTHSVSPEVI ANMRVLMTED SNSAVSNSFL LDDDSSIPFT  1500
VDDISKSMSD IDLSDVDAPP LLRDNAAFNF LQPQHERFVV PGFKQHGNSF TAAMLAAQKL  1560
NADKTYAMAT RSYSFKSATS NQQQTGVPRS SSGPKGGSNS AGTQPASAEN NDVDLGVYKT  1620
RLCLRFSTPE GCRYGDKCRF AHGKSDLRPM PAPSVRSLGS SIDSRSTGEY SRQSSMARSV  1680
DSLSLMYPSN VSNNGSYHTE PNSPASAPGF GFGSSSTSKK ISIGAAFAGA IIGKAGANVK  1740
QINRLTGAKV SIREHGTDPN MRNVEMEGSL EQIEQASEMV RQYMQNKELL SSRAAALGSR  1800
SFKTKLCKNF VQGTCTFADR CHFAHGAYEL RVANLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2dfs_A0.0101040111061Myosin-5A
2dfs_M0.0101040111061Myosin-5A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMyosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. Functions by binding with its tail domain to receptor proteins on organelles and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables. Involved in trafficking of Golgi stacks, mitochondria and peroxisomes. {ECO:0000269|PubMed:18503043, ECO:0000269|PubMed:19369591, ECO:0000269|PubMed:21914656}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5163140.0AB516314.1 Marchantia polymorpha MyoXI mRNA for myosin XI, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385121.10.0myosin-9-like isoform X1
SwissprotF4HWY60.0MYO11_ARATH; Myosin-11
TrEMBLA0A2R6XJF70.0A0A2R6XJF7_MARPO; Uncharacterized protein
STRINGPP1S131_123V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-23C3H family protein
Publications ? help Back to Top
  1. Hodge T,Cope MJ
    A myosin family tree.
    J. Cell. Sci., 2000. 113 Pt 19: p. 3353-4
    [PMID:10984423]
  2. Reddy AS,Day IS
    Analysis of the myosins encoded in the recently completed Arabidopsis thaliana genome sequence.
    Genome Biol., 2001. 2(7): p. RESEARCH0024
    [PMID:11516337]
  3. Sparkes IA,Teanby NA,Hawes C
    Truncated myosin XI tail fusions inhibit peroxisome, Golgi, and mitochondrial movement in tobacco leaf epidermal cells: a genetic tool for the next generation.
    J. Exp. Bot., 2008. 59(9): p. 2499-512
    [PMID:18503043]
  4. Avisar D, et al.
    A comparative study of the involvement of 17 Arabidopsis myosin family members on the motility of Golgi and other organelles.
    Plant Physiol., 2009. 150(2): p. 700-9
    [PMID:19369591]
  5. Peremyslov VV, et al.
    Expression, splicing, and evolution of the myosin gene family in plants.
    Plant Physiol., 2011. 155(3): p. 1191-204
    [PMID:21233331]
  6. Avisar D,Abu-Abied M,Belausov E,Sadot E
    Myosin XIK is a major player in cytoplasm dynamics and is regulated by two amino acids in its tail.
    J. Exp. Bot., 2012. 63(1): p. 241-9
    [PMID:21914656]
  7. Madison SL, et al.
    Class XI Myosins Move Specific Organelles in Pollen Tubes and Are Required for Normal Fertility and Pollen Tube Growth in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 1946-60
    [PMID:26358416]
  8. Kinkema M,Wang H,Schiefelbein J
    Molecular analysis of the myosin gene family in Arabidopsis thaliana.
    Plant Mol. Biol., 1994. 26(4): p. 1139-53
    [PMID:7811972]