PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0011s0167.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family ARF
Protein Properties Length: 879aa    MW: 96421.5 Da    PI: 7.7636
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0011s0167.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-23166267199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f k+lt sd++++g +++p++ a+++      ++++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv++++L +gD v+F  
  Mapoly0011s0167.1.p 166 FTKTLTVSDTSTHGGFSVPRRAADDClpkldmSLNPPN-QELVAKDLHGNEWRFRHIFRGQPKRHLLTTGWSVFVSQKRLVAGDAVLFL- 253
                          89*****************************9777766.59************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           + ++++l+v+v+r+
  Mapoly0011s0167.1.p 254 -RGENGQLRVGVRRA 267
                          .4489999*****97 PP
2Auxin_resp109.63.2e-36291373183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa++ks F+ +YnPr+++seFv++++k++ka+k+++ vG Rfkm+fe+ed s rr +Gt++g+ d+dp rWp+S+WrsL+
  Mapoly0011s0167.1.p 291 AAHAATEKSRFSLIYNPRSCPSEFVIPYSKYLKAVKSNFNVGQRFKMKFESEDPSDRRHTGTITGICDFDPARWPGSEWRSLQ 373
                          79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-39159273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-38159293IPR015300DNA-binding pseudobarrel domain
CDDcd100179.49E-22166266No hitNo description
PROSITE profilePS5086313.183166268IPR003340B3 DNA binding domain
SMARTSM010199.8E-22166268IPR003340B3 DNA binding domain
PfamPF023622.4E-21166267IPR003340B3 DNA binding domain
PfamPF065075.1E-32291373IPR010525Auxin response factor
PfamPF023092.6E-9742840IPR033389AUX/IAA domain
PROSITE profilePS5174524.328756839IPR000270PB1 domain
SuperFamilySSF542778.83E-9769834No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MSEASSITRH PYKANTGPLL KFQQSSDASS LPPMARPMAS RQLATSHTAA SNVSVAGDDG  60
IDAELWYACA GPQKALPPVG SVVAYLPQGH IEQVASFNNQ ELDAQIPRYN LPAVIPCMLN  120
DIQLSADPDS DEVYATLTLC PMSEQHEDSS DCAEPPPPPK RKSRSFTKTL TVSDTSTHGG  180
FSVPRRAADD CLPKLDMSLN PPNQELVAKD LHGNEWRFRH IFRGQPKRHL LTTGWSVFVS  240
QKRLVAGDAV LFLRGENGQL RVGVRRAPRQ QQLQPKVLTS PTMHIGVLAA AAHAATEKSR  300
FSLIYNPRSC PSEFVIPYSK YLKAVKSNFN VGQRFKMKFE SEDPSDRRHT GTITGICDFD  360
PARWPGSEWR SLQVNWDESS SSERQERVSP WEVEPFSPST TITPSVSTRK RLRPVTQPHS  420
ESVNRNAVET SKAQTQTMRL ARAFHGGHEM LPSSAEEEDA ESLSAKMSWI KREDNFKSEA  480
QSVGSRQGPD SWMSIRRPDP VQVPDMFRNL PASGVPDLRG MIGIERRQQE HLKFCVKQYR  540
ENKDEISGTT LQLSSPRPPN LQNYVKSSTD LNLSVSSPAS SNKGSSLLWS NSQSVTLPSY  600
NGHESTNASS WLSFRPGQSD VAASSPHCTT LSMSNLPPAD SETSSHPSTP KSYLWEKRIR  660
MEPDTNRAAA PVQSEQKCKI FGVPLDKPTP IVIPSQVPGS KAVRSTDDGS GPSSSRGLEK  720
VVSPSPTSSA VGGQEQDKGP QRSNKTSQNF QQGPVRSYTK IHKQGSFGRS IDVQSYDGYT  780
DLLRKVENMF ELNGELFDKK SGWQLVYTDH EDDVLLVGDD PWMEFVSCVR TLRLLSPGEA  840
SSSGKSGQSH DEDAGAGKDG AKRCDSSSPS AGARGDDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1295939717356Auxin response factor 1
4ldw_A1e-1295939717356Auxin response factor 1
4ldw_B1e-1295939717356Auxin response factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8779700.0KP877970.1 Marchantia polymorpha auxin response factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0G3FH200.0A0A0G3FH20_MARPO; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-121auxin response factor 2
Publications ? help Back to Top
  1. Flores-Sandoval E,Eklund DM,Bowman JL
    A Simple Auxin Transcriptional Response System Regulates Multiple Morphogenetic Processes in the Liverwort Marchantia polymorpha.
    PLoS Genet., 2015. 11(5): p. e1005207
    [PMID:26020649]
  2. Eklund DM, et al.
    Auxin Produced by the Indole-3-Pyruvic Acid Pathway Regulates Development and Gemmae Dormancy in the Liverwort Marchantia polymorpha.
    Plant Cell, 2015. 27(6): p. 1650-69
    [PMID:26036256]