PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0011s0161.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MIKC_MADS
Protein Properties Length: 265aa    MW: 29605.4 Da    PI: 9.458
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0011s0161.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.83.3e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+ien + rqvtfskRr g++KKA+ELSvLCdae+aviifsstgkl+e+ss
  Mapoly0011s0161.1.p  9 KKIENPTSRQVTFSKRRGGLMKKAHELSVLCDAEIAVIIFSSTGKLFEFSS 59
                         68***********************************************96 PP
2K-box89.56.1e-30841701298
                K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                           ++ ++++e+ kL++++e  q++qRh+lGedL+ Ls+ +L qLeqqL+ +++++R++K++llle+ieel++ke++l+een++Lr+kl
  Mapoly0011s0161.1.p  84 DNNDYMSREVMKLRQQLEHSQHTQRHMLGEDLTVLSVPDLLQLEQQLDVGVSRVRQRKSQLLLEEIEELRRKEHKLHEENEELRRKL 170
                          57889********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.6E-43160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.786161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-34276IPR002100Transcription factor, MADS-box
CDDcd002652.92E-45276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-2885170IPR002487Transcription factor, K-box
PROSITE profilePS5129716.3586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010094Biological Processspecification of carpel identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRGKIEIKK IENPTSRQVT FSKRRGGLMK KAHELSVLCD AEIAVIIFSS TGKLFEFSSN  60
GGMKEILERY SKNPDGIQAG RMGDNNDYMS REVMKLRQQL EHSQHTQRHM LGEDLTVLSV  120
PDLLQLEQQL DVGVSRVRQR KSQLLLEEIE ELRRKEHKLH EENEELRRKL VDAKGIADAA  180
ARGVPGLGSN LQSPNARSES AATQSVPQVY PLQPNLRDPQ PTSQPSLQLG LFAQSSSRSR  240
GPAHQNSGPE NEATSRPSEW MLQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22171170MEF2C
5f28_B2e-22171170MEF2C
5f28_C2e-22171170MEF2C
5f28_D2e-22171170MEF2C
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373432.11e-102MADS-box protein GGM13-like isoform X2
TrEMBLA0A2R6XK430.0A0A2R6XK43_MARPO; Uncharacterized protein
STRINGPP1S26_90V6.11e-100(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.29e-45MIKC_MADS family protein