PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0011s0037.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | LBD | ||||||||
Protein Properties | Length: 179aa MW: 19939 Da PI: 8.5998 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 79.1 | 7.1e-25 | 13 | 111 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyG.avgvilklqqqleq 89 +C aC lrrkC+++Cv+apyfpa+++ k a+v++ F snv+k++++lpe+ r d ++sl++eAear++d + + i +lq ++++ Mapoly0011s0037.1.p 13 PCGACTSLRRKCTAECVFAPYFPADEALKVAYVQRNFEPSNVTKIMHDLPESSRADEVTSLAFEAEARMKDLAVSlTQRRIVELQGEIAE 102 7**********************************************************************6555156789999999999 PP DUF260 90 lkaelallk 98 l +++++ + Mapoly0011s0037.1.p 103 LMEQVKYFE 111 999888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.614 | 12 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-23 | 13 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSHTGGGSSP SLPCGACTSL RRKCTAECVF APYFPADEAL KVAYVQRNFE PSNVTKIMHD 60 LPESSRADEV TSLAFEAEAR MKDLAVSLTQ RRIVELQGEI AELMEQVKYF EEKKRMRLTQ 120 GPSVTRVASR CLRVKRNPEF THEGTVIRVL LNRWVLLECT YLTLLVRGST GGAQLEKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-25 | 13 | 109 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-25 | 13 | 109 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018453069.1 | 3e-28 | PREDICTED: LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 2e-27 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A176W1Z5 | 1e-129 | A0A176W1Z5_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6XJP0 | 1e-129 | A0A2R6XJP0_MARPO; Uncharacterized protein | ||||
STRING | Bra039072.1-P | 2e-26 | (Brassica rapa) | ||||
STRING | Bo9g008330.1 | 2e-26 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 8e-30 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0011s0037.1.p |
Publications ? help Back to Top | |||
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