PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0010s0070.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 622aa    MW: 70844.2 Da    PI: 5.5278
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0010s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.7e-09590615127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ykt+lCr+++  G C+ G  CkFaHg+
  Mapoly0010s0070.1.p 590 YKTKLCRYWMS-GNCRLGQHCKFAHGE 615
                          9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF530986.45E-8169269IPR012337Ribonuclease H-like domain
PfamPF134561.6E-14170276No hitNo description
SuperFamilySSF578501.51E-15313397No hitNo description
Gene3DG3DSA:3.30.40.102.7E-8316378IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.92E-4317363No hitNo description
PfamPF000973.7E-5318364IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008911.117318365IPR001841Zinc finger, RING-type
SMARTSM001849.1E-6318365IPR001841Zinc finger, RING-type
PROSITE patternPS005180336345IPR017907Zinc finger, RING-type, conserved site
SMARTSM006476.1E-15385466IPR002867IBR domain
PfamPF014852.1E-12387466IPR002867IBR domain
SuperFamilySSF578501.37E-18480544No hitNo description
SMARTSM006470.0084483537IPR002867IBR domain
PfamPF014853.1E-9487537IPR002867IBR domain
SuperFamilySSF902299.58E-9588620IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-14589619IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.652589616IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7589615IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7590615IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MADVVAARQQ LLEVNKATVM YSDWELAYDL QLEEAMAASA MDVPPVKSQI REGKRPVEES  60
FVQETLPKNS LDKTTLDVRD RFSALGFQSA ELQILEEILG DQKKAAKEAQ DLIQEFRMRS  120
HDRQFAKSVD EMPDTEWEEE GDIYEEPFHG LDDDYWDENQ VCKLYTGRAR EEPGHVAMAW  180
SLRDAEGHVL VESGKYLGMG TAAYVAEYTA LIEGLSYAVA AGVKNIQART FSHPVFNQVS  240
GLWKARAPKH IKLLEEVFEH TKQLKVFNIR LTSRRTVENL AHDAIRKHVT QGPKDIKRLK  300
PSSSGFVTTP EETDMIDCPV CLENVREADT FVVQECLHRF CVSCLTQHVQ IRVKSNQVPV  360
KCPQDCSRLV DVEQCRNFLP PDLVELYTKS LIEASIPESE RVYCPFTNCS ALMSKGDLNP  420
SSRPSSSRPS SSRQPKSFAI GQVECMECHR LFCVECQVPW HADMSCEDYN NLPPDGRAAE  480
DIKLYKLASN KNWQRCTKCR RMIELDQGCY HMTCRCGHEF CYKCGAPWVD KHATCKCKLW  540
DEEHIVGDPF SSDSEIDANS ESDVDSVFDD DGLFPRRRPF NPLAVSELLY KTKLCRYWMS  600
GNCRLGQHCK FAHGEHELRY L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kbl_A1e-12300528170381E3 ubiquitin-protein ligase ARIH1
4kbl_B1e-12300528170381E3 ubiquitin-protein ligase ARIH1
4kc9_A1e-12300528170381E3 ubiquitin-protein ligase ARIH1
5tte_B1e-12300528169380E3 ubiquitin-protein ligase ARIH1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XKR40.0A0A2R6XKR4_MARPO; RBR-type E3 ubiquitin transferase
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP215622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-06C3H family protein