PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0009s0061.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family ERF
Protein Properties Length: 725aa    MW: 78253.2 Da    PI: 6.9498
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0009s0061.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.8e-20376426256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Mapoly0009s0061.1.p 376 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAAFAYDQAAYKLRGE 426
                          59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.55E-31375435No hitNo description
Gene3DG3DSA:3.30.730.102.5E-31376434IPR001471AP2/ERF domain
SMARTSM003809.0E-37376439IPR001471AP2/ERF domain
PROSITE profilePS5103223.222376433IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22376433IPR016177DNA-binding domain
PfamPF008472.2E-13377426IPR001471AP2/ERF domain
PRINTSPR003672.2E-10377388IPR001471AP2/ERF domain
PRINTSPR003672.2E-10399415IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MMEQKCESID FSMEQSLRHS EYFMSAAASA KIKMQHDSHH HHHNMMDLPS STSATYSGML  60
RMPELYPDHN ALALARLKLP GPESPESTSS SASSSYGEGA GGVEQPTKEG AEARLQSGAA  120
MVESFGSACA STTDFHLNLA SQFFSIANHL QGPSSSSVGP SVSSSTAAQP MYADLLPSFA  180
GSASILPWNH QQPSVAQGGS FSNLSTVTGS DRTPPPYFHL MGVDQHHYHT SPPSGSAGHP  240
QQLMHQLPAA GDDPRALLVG GASHSNHEHH QHQHQQQQQQ HHQQQQHQQQ QQQQVQVLQQ  300
LQAAQHLQQL LQLQQPFNSN NSSSSSIIQQ QQTQMRQPQH NSWSEASNLS PRGQCMKFQK  360
HDKRVGAAGG PRQTKLYRGV RQRHWGKWVA EIRLPRNRTR LWLGTFDTAE EAAFAYDQAA  420
YKLRGEYARL NFPAVKHPVR LDGTGSAGEV WPGMAGRGPP DQIRPLPSTL DAKLQTIALH  480
NSNPSRDFSL GVHHHRTTNT SNAACTTTTT TTATTNMASD QQAASMYASP ASTVTTATAV  540
HDCGDHQPTG TSRFAPLQNS MELAHQDGVG CFDDEYMRRA SLVDASRREA LGAVLGGGGG  600
GGDSSRFMND CASLSPPMLV SAGESGSAFS PGRSECDTLS SGSATFTDSG TIWAEIDDNL  660
LNNAPSLDVT NLTWDVLAMA PKVQQQHQQQ QQQQQSAVSS ATAAAAISTQ AAVTRPLYVW  720
RDCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19375433160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XLF60.0A0A2R6XLF6_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.12e-29ERF family protein