PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Mapoly0007s0271.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 560aa MW: 58834.7 Da PI: 5.9516 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 35 | 80 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar ++ gR++k+c++rw + Mapoly0007s0271.1.p 35 KGPWSPEEDVILSKLVDKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 80 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.4 | 6.8e-18 | 87 | 131 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd +v a++ +G++ W++Iar+++ gRt++ +k++w++ Mapoly0007s0271.1.p 87 RKPFTEEEDRAIVTAHAVHGNK-WASIARMLP-GRTDNAIKNHWNST 131 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.756 | 30 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-30 | 33 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-16 | 34 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-17 | 35 | 80 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 36 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.26E-14 | 37 | 79 | No hit | No description |
PROSITE profile | PS51294 | 26.89 | 82 | 136 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-17 | 86 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 87 | 131 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.70E-13 | 89 | 132 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 89 | 135 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 560 aa Download sequence Send to blast |
MRGAGGGGGG GGGAGGGVGN GGGNGAGGAA DDRIKGPWSP EEDVILSKLV DKFGARNWSL 60 IARGIPGRSG KSCRLRWCNQ LNPVVKRKPF TEEEDRAIVT AHAVHGNKWA SIARMLPGRT 120 DNAIKNHWNS TLRRKYLGDD RGRKGEGSSG DDTRAGKDEG STDGSSDKVK GEVSDTDRSK 180 AGDAEMDMDG ADNDSQGKDA DERDVSSEQS WPSFDDARAA AAEKIIEAET TTTTTTTTTT 240 TFDSRRGSPG ESSKGDPGQV QNLSPDGGVD DVQQQQQQHQ QHHLHQQQQQ QAVNFFPAAA 300 PHSAVVVRPT PRSAFSSYDP NNVRPPPKKE ENSGGAAGMF SSPYIHRPLS LSLSLPSSAN 360 FDDECPTSGS HNPARSLAGP FWTPPRWNAT PDVPNFCGRG CCPPQGYGMS HGASISPKGP 420 LMGPEYHDFA DEYASTKVGA APPPYAPFPF PMSSSSPCVS SGMMPSAGGP VPPPVAYGQS 480 PEVLTAAINM ALAQVMMPML SGQNPQSEGC FASDSSIPPG SNPLVEVLRG IVAREISQYT 540 SAMIQAQQQN LDGLKQQNP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-41 | 32 | 135 | 4 | 107 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A176W6I7 | 0.0 | A0A176W6I7_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6XPG5 | 0.0 | A0A2R6XPG5_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G55730.1 | 1e-56 | myb domain protein 109 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Mapoly0007s0271.1.p |