PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0007s0221.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family HD-ZIP
Protein Properties Length: 399aa    MW: 43410.3 Da    PI: 4.6892
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0007s0221.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-1888141356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++t++q++ Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Mapoly0007s0221.1.p  88 KKRRLTTDQVKSLEKNFELENKLEPERKLQLARELGLQPRQVAVWFQNRRARWK 141
                          45689************************************************9 PP
2HD-ZIP_I/II127.55.5e-4187178192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrl+++qvk+LE++Fe e+kLeperK +lareLglqprqvavWFqnrRAR+ktkqlE+dy++Lk+ yd+lk++ +++ +e+e+L++e
  Mapoly0007s0221.1.p  87 EKKRRLTTDQVKSLEKNFELENKLEPERKLQLARELGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSDYDNLKASFDTIVAEKEKLQAE 176
                          69*************************************************************************************998 PP

          HD-ZIP_I/II  91 lk 92 
                          + 
  Mapoly0007s0221.1.p 177 VL 178
                          75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-2071145IPR009057Homeodomain-like
PROSITE profilePS5007117.8883143IPR001356Homeobox domain
SMARTSM003895.1E-1686147IPR001356Homeobox domain
CDDcd000861.71E-1688144No hitNo description
PfamPF000465.7E-1688141IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.6E-2089150IPR009057Homeodomain-like
PRINTSPR000311.2E-5114123IPR000047Helix-turn-helix motif
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5123139IPR000047Helix-turn-helix motif
PfamPF021831.5E-17143185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MMAASARAYN AANVMLMRSE STSADTLVAM LASCGAPGMQ APRSVGVGGL EEAVMGGGQK  60
RPFYPIFDTS EDNGDDDGGD DCSHHVEKKR RLTTDQVKSL EKNFELENKL EPERKLQLAR  120
ELGLQPRQVA VWFQNRRARW KTKQLERDYD VLKSDYDNLK ASFDTIVAEK EKLQAEVLQL  180
TSKLQAKEKQ RKLDGAAGQV FEAEELEVAV NNLSPHAHLD VVVPSMKSEL PTHQHLVQEF  240
QQQQQQQQQQ QQQQMGTPPA TTESLVKCKD KEGSTSSESN SSEIMNADSP HPIDSGLSPG  300
VDQKLIQCSS GFSLGGGGGG GGAAAAAAAA AAADTGVETS LVQFAEELCG GARLVPPQGY  360
QRISVKLEDG SNVLQDECNY YFHQMDADQA SLPWWEWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XP190.0A0A2R6XP19_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-38homeobox 1