PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0007s0156.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | Whirly | ||||||||
Protein Properties | Length: 254aa MW: 28406.3 Da PI: 9.3772 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 169.4 | 8.5e-53 | 77 | 213 | 2 | 138 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91 ykt++a+++k+v+p f+ ld+gn++l+r+G+l+le+a+ +a+r+ydW+ kq fals+ e+++lv la+ escef+hdp +++s++Gk+r Mapoly0007s0156.1.p 77 FYKTRGAMSMKPVKPVFKLLDTGNAVLDREGSLFLEFAPPVAQRQYDWNSKQIFALSVMELGTLVGLAPGESCEFYHDPNMGKSDAGKIR 166 6***************************************************************************************** PP Whirly 92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 k+lkv+P+ d G+++nlsv n+ + +e++ + +++ae++v+rs + Mapoly0007s0156.1.p 167 KSLKVNPMKDEDGYYFNLSVVNKQENLDERVNIALTRAEYSVMRSSI 213 *******************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 3.0E-65 | 66 | 229 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 4.47E-51 | 70 | 252 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 4.5E-53 | 78 | 211 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MALHSLCNSL SLRIASSSRK WIGDAKSLRK SSQSVAIKPS RLQARAEYAG YTSPQSTTTL 60 RTNGTQGARR VFVNYTFYKT RGAMSMKPVK PVFKLLDTGN AVLDREGSLF LEFAPPVAQR 120 QYDWNSKQIF ALSVMELGTL VGLAPGESCE FYHDPNMGKS DAGKIRKSLK VNPMKDEDGY 180 YFNLSVVNKQ ENLDERVNIA LTRAEYSVMR SSINYIIPYL MGWHVFVDPS TVDDFLADDE 240 PVGSMTTKNE WDK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 3e-60 | 70 | 228 | 8 | 166 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 3e-60 | 70 | 228 | 8 | 166 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 3e-60 | 70 | 228 | 8 | 166 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 3e-60 | 70 | 228 | 8 | 166 | Single-stranded DNA-binding protein WHY1, chloroplastic |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC057394 | 0.0 | LC057394.1 Marchantia polymorpha gene for hypothetical protein, complete cds, strain: MpWhirly. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9M9S3 | 4e-59 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A0M4TR37 | 0.0 | A0A0M4TR37_MARPO; Uncharacterized protein | ||||
STRING | EFJ15931 | 1e-66 | (Selaginella moellendorffii) | ||||
STRING | EFJ33294 | 1e-66 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2316 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 2e-61 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0007s0156.1.p |