PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0005s0287.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 395aa    MW: 41321.5 Da    PI: 8.4234
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0005s0287.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.7e-06103126225
                          -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                          kt++C  f+ t  C+yG+ C+F H
  Mapoly0005s0287.1.p 103 KTKPCTKFFSTSGCPYGEGCHFLH 126
                          9*********************** PP
2zf-CCCH28.52.6e-09185211127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ykt+lC+++     C++G++C+FaHg+
  Mapoly0005s0287.1.p 185 YKTRLCNRYNTPEGCRFGEKCHFAHGE 211
                          9************************96 PP
3zf-CCCH26.61e-08359383126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+ C +f + GtC + drC+FaHg
  Mapoly0005s0287.1.p 359 FKTKMCENFVQ-GTCTFADRCHFAHG 383
                          69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.465101129IPR000571Zinc finger, CCCH-type
SMARTSM003560.63101128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-6102127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-8103126IPR000571Zinc finger, CCCH-type
SMARTSM003560.0068184211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314184212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8185215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-14185216IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6185211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.102.8E-17269343IPR004088K Homology domain, type 1
SuperFamilySSF547911.05E-14269344IPR004088K Homology domain, type 1
SMARTSM003222.9E-14272342IPR004087K Homology domain
PROSITE profilePS5008415.997273337IPR004088K Homology domain, type 1
CDDcd001052.64E-15275337No hitNo description
PfamPF000136.8E-12275338IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.7E-15356388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8357389IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056358385IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5358384IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-5359383IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MLGQHPEPVQ AFIPSCTLRI NCQNDRPRAS SFLYLSLSLW TLWSKQLGTM AVYEPVQKKA  60
RAYESNGNGL CNGNGTAAEQ PSSTPINDER GDAGAPTSAL GSKTKPCTKF FSTSGCPYGE  120
GCHFLHYVPG GIVALGLAPL ANVNGTGLVL GSAGVRNLLG AAGMSATQGG GAATVADPSV  180
TVGGYKTRLC NRYNTPEGCR FGEKCHFAHG EADLRPSNNG RGSTGRSGLD YLQAGAAAAG  240
LYANGHPSTA VASALFYGEP TPPGVTATGF GATSTTKISI EAAFAGAIIG KAGSNVKQIS  300
RLTGAKLSIR EHETDPNMRN VEMEGSFEQI EHASEMVRQF LQNRDVVAPK AAALGSHNFK  360
TKMCENFVQG TCTFADRCHF AHGAHELRVL STMR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396649.11e-132zinc finger CCCH domain-containing protein 14-like isoform X2
TrEMBLA0A2R6XRE10.0A0A2R6XRE1_MARPO; Uncharacterized protein
STRINGPP1S66_196V6.11e-130(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-32C3H family protein