PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0005s0159.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

HB-other

Protein Properties

Length: 1900aa MW: 210604 Da PI: 4.7058

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0005s0159.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.9e-19	18	72	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ryp+++ r+eL+++l+L+++q ++WF+ rR k++k Mapoly0005s0159.1.p 18 KRRMKTPFQLEALERVYAEDRYPTEAVRAELSSQLNLSDKQLQMWFCHRRLKDRK 72 8999*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-17	4	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.99E-16	8	73	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.358	13	73	IPR001356	Homeobox domain
SMART	SM00389	3.5E-17	15	77	IPR001356	Homeobox domain
CDD	cd00086	1.73E-14	18	74	No hit	No description
Pfam	PF00046	2.4E-16	18	72	IPR001356	Homeobox domain
PROSITE profile	PS50827	15.012	634	693	IPR018501	DDT domain
SMART	SM00571	2.0E-15	634	693	IPR018501	DDT domain
Pfam	PF02791	6.5E-16	635	689	IPR018501	DDT domain
Pfam	PF05066	3.6E-15	831	898	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.7E-8	1004	1043	IPR028942	WHIM1 domain
Pfam	PF15613	2.2E-12	1204	1276	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1900 aa Download sequence Send to blast
MDSDGENRLS SPEEKNPKRR MKTPFQLEAL ERVYAEDRYP TEAVRAELSS QLNLSDKQLQ 60 MWFCHRRLKD RKGKDDEIPG AAGRKKQKTD RPGGGVGASA GGGGGGGGLK AGYPGAVLEP 120 EMGEAAAVGR NGYNDELDFE EEEHGMGMLR GSASAQPQHR KVAAQEAEPA PRRRNQAPVG 180 RVVDPRAAAE NAAVSAVEAQ LGEPVRENGP ILGVEFDPLP PGAFGTPIDH KSEQRVATAP 240 PRVHSEDRAQ ERQESRPSKA GAFGLPPLPT TGVKRKAVGL SGQQSFSAQQ VPRTPREFQF 300 LPEQPTAREE SQSHQRQIQL NLHPNAERFD LLPAPRVRSL SPLGGFLPTN MHSIPSGDGY 360 GFPQERVQNV GISLLPPGES RPSGLYAQNG LGLDDPQRRG LYHSFDVEGQ MGFRQTAIQA 420 MAANQSAVAP TESLALFHEH EQARLEKKRK SEELKVAKES EANVKRMKRE MERQEIVRRK 480 KEEQMRRELE KQDRDKRKEE ERAVRERQRE EERIQREHRR EMERRERMLL KENKRIEKQR 540 RKEEVRKAKE AARLKAASER AAAKKLSKES MDTIDDEQLE LMEAATAQGL FSVNGLDDGG 600 AQVMDISKVL LKKFPPASVR MKLPLAIRPW NELEHCMGHF FMVWRFLTTF ADVIGLWPFT 660 LDEFAQSLHD FDPRLLGEIH IALIKTMVKN IEDAAQAATS GAGGSQNAIA LASGGHPQLV 720 EAAYEWGFDI KEWGQHVNPL TWPEILRQFA LAAGYGPKWR KRNVEAPARP REEVEVFPRP 780 SRQSGDPPEP VEEENAVSIL RSGAAAASAV ALMQGKGVGH LRRCRYRLTP GTVKYAAFHV 840 LSLEGSKGLT ILEVADRIQK SGLRDLTTSK TPEASIAAAL SRDTNLFERV APSTYCVRPA 900 FRKDPEDAEE VLQAARERIR LFQSGFLDVE EAEKENEEGE EVERDEEYDS DGQDVEDADA 960 DADADVDTPI PKESELKDES LQAEDAAKSE SLAEEEMEID ESQVGEPWVQ GLMEGEYAEL 1020 SVEERLVALV ALINVVNEGN SIRLALESRM EAASALKRQM WAEAQIERRR HKEEQLLRLQ 1080 PALLAAAKNE SGEMVDVGSV PVTVTGEKVV EPLVSTKQET ILELNLVPAD SNMVSDGPGS 1140 VEHNPSVAEK SITVQEKNGS MHEKNAPHEG SVTQEAVASG HVTERSRAQV KADIGVWAEE 1200 LYVVRSLPLG TDRRRNRYWQ FVTCRGGQDP SCGRIFFESF SDGLWEVIDT EEALDALMSS 1260 LDIRGTREAA LHAVLVRLES TLRPAMRLAA ASSSSSVSHH DVKSELGEAG KPTDSAGRGG 1320 ASGASYGTAV DGSPSSGLGV EIPARSGSIS VDLGKTDAEK QRAFDRFKDF EHWTWTENTR 1380 SLSALKVAKT GRKREPDLLL CCSKCHELYS AIDKHCQFCH ATFPKTQTKH DFHARECEDK 1440 MKKKDPAWKL CGLSSVPPRI QILKADILYI ETVIPSEAFK DPWDHQERKA WASLLKRAMT 1500 PSELLQCLTE LESRIHREWL SSSYETTEEL LSASASSVTI ANQVAPWVPQ TSAAVALRVM 1560 AFDAALSYSS EERKRRQKQE EEERKNLMHT SIGVFPSRTT PEVPVVEKPD VDEDDVVVDV 1620 ASGRGRGRGR GRGRGSRGGG RGSRSSRSAP PATTNSRATV KKGASKRKLQ FQEEGAAEGK 1680 QGGKGGGRGQ GRSRGRPRGR GSGRPRGRGS RGGRRSVAVR RIDKLPKEKN PNELMSQEVV 1740 LRKGQVAEPE DDHEEEEAES EEEDAFRSGE WDGSEEQMED QQEDAEEEEE EDDEEEDLTG 1800 AMQEEEDEDE DGEEGDEEEV QVEEGDDEGQ AEDGDENGQE EEGDEEDEDR QYDDDSYPQD 1860 GEGEDDEEAV EPETDEDEEE EEVEEADEGA ESARESDED*

Sequence ? help Back to Top

Protein Sequence Length: 1900 aa Download sequence Send to blast

MDSDGENRLS SPEEKNPKRR MKTPFQLEAL ERVYAEDRYP TEAVRAELSS QLNLSDKQLQ  60
MWFCHRRLKD RKGKDDEIPG AAGRKKQKTD RPGGGVGASA GGGGGGGGLK AGYPGAVLEP  120
EMGEAAAVGR NGYNDELDFE EEEHGMGMLR GSASAQPQHR KVAAQEAEPA PRRRNQAPVG  180
RVVDPRAAAE NAAVSAVEAQ LGEPVRENGP ILGVEFDPLP PGAFGTPIDH KSEQRVATAP  240
PRVHSEDRAQ ERQESRPSKA GAFGLPPLPT TGVKRKAVGL SGQQSFSAQQ VPRTPREFQF  300
LPEQPTAREE SQSHQRQIQL NLHPNAERFD LLPAPRVRSL SPLGGFLPTN MHSIPSGDGY  360
GFPQERVQNV GISLLPPGES RPSGLYAQNG LGLDDPQRRG LYHSFDVEGQ MGFRQTAIQA  420
MAANQSAVAP TESLALFHEH EQARLEKKRK SEELKVAKES EANVKRMKRE MERQEIVRRK  480
KEEQMRRELE KQDRDKRKEE ERAVRERQRE EERIQREHRR EMERRERMLL KENKRIEKQR  540
RKEEVRKAKE AARLKAASER AAAKKLSKES MDTIDDEQLE LMEAATAQGL FSVNGLDDGG  600
AQVMDISKVL LKKFPPASVR MKLPLAIRPW NELEHCMGHF FMVWRFLTTF ADVIGLWPFT  660
LDEFAQSLHD FDPRLLGEIH IALIKTMVKN IEDAAQAATS GAGGSQNAIA LASGGHPQLV  720
EAAYEWGFDI KEWGQHVNPL TWPEILRQFA LAAGYGPKWR KRNVEAPARP REEVEVFPRP  780
SRQSGDPPEP VEEENAVSIL RSGAAAASAV ALMQGKGVGH LRRCRYRLTP GTVKYAAFHV  840
LSLEGSKGLT ILEVADRIQK SGLRDLTTSK TPEASIAAAL SRDTNLFERV APSTYCVRPA  900
FRKDPEDAEE VLQAARERIR LFQSGFLDVE EAEKENEEGE EVERDEEYDS DGQDVEDADA  960
DADADVDTPI PKESELKDES LQAEDAAKSE SLAEEEMEID ESQVGEPWVQ GLMEGEYAEL  1020
SVEERLVALV ALINVVNEGN SIRLALESRM EAASALKRQM WAEAQIERRR HKEEQLLRLQ  1080
PALLAAAKNE SGEMVDVGSV PVTVTGEKVV EPLVSTKQET ILELNLVPAD SNMVSDGPGS  1140
VEHNPSVAEK SITVQEKNGS MHEKNAPHEG SVTQEAVASG HVTERSRAQV KADIGVWAEE  1200
LYVVRSLPLG TDRRRNRYWQ FVTCRGGQDP SCGRIFFESF SDGLWEVIDT EEALDALMSS  1260
LDIRGTREAA LHAVLVRLES TLRPAMRLAA ASSSSSVSHH DVKSELGEAG KPTDSAGRGG  1320
ASGASYGTAV DGSPSSGLGV EIPARSGSIS VDLGKTDAEK QRAFDRFKDF EHWTWTENTR  1380
SLSALKVAKT GRKREPDLLL CCSKCHELYS AIDKHCQFCH ATFPKTQTKH DFHARECEDK  1440
MKKKDPAWKL CGLSSVPPRI QILKADILYI ETVIPSEAFK DPWDHQERKA WASLLKRAMT  1500
PSELLQCLTE LESRIHREWL SSSYETTEEL LSASASSVTI ANQVAPWVPQ TSAAVALRVM  1560
AFDAALSYSS EERKRRQKQE EEERKNLMHT SIGVFPSRTT PEVPVVEKPD VDEDDVVVDV  1620
ASGRGRGRGR GRGRGSRGGG RGSRSSRSAP PATTNSRATV KKGASKRKLQ FQEEGAAEGK  1680
QGGKGGGRGQ GRSRGRPRGR GSGRPRGRGS RGGRRSVAVR RIDKLPKEKN PNELMSQEVV  1740
LRKGQVAEPE DDHEEEEAES EEEDAFRSGE WDGSEEQMED QQEDAEEEEE EDDEEEDLTG  1800
AMQEEEDEDE DGEEGDEEEV QVEEGDDEGQ AEDGDENGQE EEGDEEDEDR QYDDDSYPQD  1860
GEGEDDEEAV EPETDEDEEE EEVEEADEGA ESARESDED*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1571	1576	ERKRRQ
2	1623	1633	RGRGRGRGRGR
3	1625	1634	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6XQZ3	0.0	A0A2R6XQZ3_MARPO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	1e-116	homeobox-1

Link Out ? help Back to Top
Phytozome	Mapoly0005s0159.1.p