PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0005s0044.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 398aa    MW: 42897.1 Da    PI: 9.2025
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0005s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.6e-10526325
                         S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                         +e+Cr+f+r G C+yG rCkF H
  Mapoly0005s0044.1.p  5 QEICRDFQR-GSCRYGTRCKFLH 26
                         79*******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.277229IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.1E-6429IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7526IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-8627IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSRRQEICRD FQRGSCRYGT RCKFLHQTNA PQQPRQPQNN QNQRNAFGGA AGNNYYGALG  60
NNNNNNNNNH SQRHNTQSSV AAKEHKCNNP RLCKDQIEED FQNEHPVFWR LTCYAHYKFL  120
PNDIVGDVSP EELRAIAYDS AKQGLSLKDV AQREASMFAA KNAEFEALRR NPYKGPASQG  180
SATPFSPFSA SPFMSSPASQ NNSSAMVSGQ PLTLSNPNPA AGQGFAQNPN IFGAPAPRGF  240
SFGQPSVGSG DTIFGPRPST QNPSPFGVQQ PNVFQQTPFQ QSPFTNTASP PAVAQPAAQT  300
QSPFTNVQAG SSGVQSPFGF NSPFTGFPSN PGSTRGFASP PGNSPSLSAT PAPLLVNTST  360
VPVPVRSTNA DEDAKWFKDV WKIGEIPEGE PPVQVRY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XQJ70.0A0A2R6XQJ7_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP78131415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.24e-33C3H family protein