PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0001s0298.4.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

TCP

Protein Properties

Length: 1146aa MW: 122880 Da PI: 8.0822

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0001s0298.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.5	1.7e-36	588	787	2	128
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 g+kdrhsk+ T++g+RdRRvRls+++a +f+d+qd+LGfd++sk++eWL+ +ak ai+el + Mapoly0001s0298.4.p 588 SGGKDRHSKVNTAKGPRDRRVRLSVPTAVQFYDVQDRLGFDQPSKAVEWLIHKAKDAIDELGRIpvdgkdgprvpsvctsditrhvsiss 677 689**********************************************************999999998888888888888776666 PP TCP 66 ...............ssssaseceaesssssasnsssg.................................................kaa 91 s c+++s + + + Mapoly0001s0298.4.p 678 sygagavsglvsgtsS------CSPAS----------SfqgpssmsygdqlsflmnpsiaqgmfaplqpnqgnfagptfgvgrmdltRPN 751 6666555555444331......32222..........022222233345555666777778999999999999*******986555 PP TCP 92 ksaakskksqksaasalnlak.esrakarararertre 128 + +a++ +s++sa + la+ esr kar+rarert++ Mapoly0001s0298.4.p 752 SGSAEGGRSNESAG--SPLARvESRTKARERARERTKK 787 55556666666666..899999************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.8E-34	589	787	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.971	590	648	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.434	771	788	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 1146 aa Download sequence Send to blast
MLAWARSVDS STSCHARSTS WRIGFEGNCW PVERDLQDVC NRQCSDSTGY LEVSVRAAKQ 60 PQSELCFSVA NGSKFESKVD ERARDGERFR IERDQIRQYA QSIYRTLADP QAAAVPTEQR 120 SSGLRSSIPG GQLACDVSKY RVQTASANQL HPNSNDSFES INFSPSSPIT DHQRELRRTE 180 IEAGLEPEGT RRQNVGEEAS DQINRATSLK NGFPLAERAS APEKFIAEGL DDSEPARHGR 240 GGPQNKRSSI WAKNVELVGH GPFAFRENIV ECSTHIGVSE KEGFVLHNVI DAQASHGRAK 300 EPTADSGTPR SQNSHQRTIH PQGRQDRAKT ANAIPSSPQS QALTDRVSRG AASDALGTDL 360 LPQSIGSDLL QQGTTPARVE RVQNISRTRS GGERDVEDTL KGRRYPERIG DLRATTVATA 420 GRQHKAERSG EIPPVRTSQE TVVGTAGVLT IPERIGGTAE DLTAREIVDV SESHSVSERV 480 GGRAETHSAQ DGGSAEGFTI RERTGGSPSE GNKIPERIGA VSDRDSAGKV QEKGKEEKLH 540 PREEGHQRQS ESSDERRLRA RIDGSGGSAS GGGDEIEEPK VVRPARPSGG KDRHSKVNTA 600 KGPRDRRVRL SVPTAVQFYD VQDRLGFDQP SKAVEWLIHK AKDAIDELGR IPVDGKDGPR 660 VPSVCTSDIT RHVSISSSYG AGAVSGLVSG TSSCSPASSF QGPSSMSYGD QLSFLMNPSI 720 AQGMFAPLQP NQGNFAGPTF GVGRMDLTRP NSGSAEGGRS NESAGSPLAR VESRTKARER 780 ARERTKKGPG RDGNQGKVTS GGSPSSSQSP PFHPNPAFNS FNASNSIQSS GHGLSLQSPH 840 QSALLPAAYD GSPFSRIMQG SHQATFQNMI MHNPPLDCQF GDQTQSPLHN AFLVQPQASL 900 PSPSHTMNTL QHPHLQTMQV NAQGALHLGT NFNPGPCSSS FAEASMSSPH YPPVPTLPIS 960 QSLSIPQLSS LGMSPASSLG PHYPTGSPTP IPPGFSPGPP ASAFRAHSLS ISQCSNPNQN 1020 HQQQQQQLQG LSRVQRPVPS FSTTPSTSHA GSSSSRAHAH PYYSGNSSTA LMGCLQSMPS 1080 FAPRSNVGYE HGQRVRPMMS PNRIHSYQAS NSQIPARIHG LDDMEELEEE PNPATPSSPH 1140 LSPHP*

Sequence ? help Back to Top

Protein Sequence Length: 1146 aa Download sequence Send to blast

MLAWARSVDS STSCHARSTS WRIGFEGNCW PVERDLQDVC NRQCSDSTGY LEVSVRAAKQ  60
PQSELCFSVA NGSKFESKVD ERARDGERFR IERDQIRQYA QSIYRTLADP QAAAVPTEQR  120
SSGLRSSIPG GQLACDVSKY RVQTASANQL HPNSNDSFES INFSPSSPIT DHQRELRRTE  180
IEAGLEPEGT RRQNVGEEAS DQINRATSLK NGFPLAERAS APEKFIAEGL DDSEPARHGR  240
GGPQNKRSSI WAKNVELVGH GPFAFRENIV ECSTHIGVSE KEGFVLHNVI DAQASHGRAK  300
EPTADSGTPR SQNSHQRTIH PQGRQDRAKT ANAIPSSPQS QALTDRVSRG AASDALGTDL  360
LPQSIGSDLL QQGTTPARVE RVQNISRTRS GGERDVEDTL KGRRYPERIG DLRATTVATA  420
GRQHKAERSG EIPPVRTSQE TVVGTAGVLT IPERIGGTAE DLTAREIVDV SESHSVSERV  480
GGRAETHSAQ DGGSAEGFTI RERTGGSPSE GNKIPERIGA VSDRDSAGKV QEKGKEEKLH  540
PREEGHQRQS ESSDERRLRA RIDGSGGSAS GGGDEIEEPK VVRPARPSGG KDRHSKVNTA  600
KGPRDRRVRL SVPTAVQFYD VQDRLGFDQP SKAVEWLIHK AKDAIDELGR IPVDGKDGPR  660
VPSVCTSDIT RHVSISSSYG AGAVSGLVSG TSSCSPASSF QGPSSMSYGD QLSFLMNPSI  720
AQGMFAPLQP NQGNFAGPTF GVGRMDLTRP NSGSAEGGRS NESAGSPLAR VESRTKARER  780
ARERTKKGPG RDGNQGKVTS GGSPSSSQSP PFHPNPAFNS FNASNSIQSS GHGLSLQSPH  840
QSALLPAAYD GSPFSRIMQG SHQATFQNMI MHNPPLDCQF GDQTQSPLHN AFLVQPQASL  900
PSPSHTMNTL QHPHLQTMQV NAQGALHLGT NFNPGPCSSS FAEASMSSPH YPPVPTLPIS  960
QSLSIPQLSS LGMSPASSLG PHYPTGSPTP IPPGFSPGPP ASAFRAHSLS ISQCSNPNQN  1020
HQQQQQQLQG LSRVQRPVPS FSTTPSTSHA GSSSSRAHAH PYYSGNSSTA LMGCLQSMPS  1080
FAPRSNVGYE HGQRVRPMMS PNRIHSYQAS NSQIPARIHG LDDMEELEEE PNPATPSSPH  1140
LSPHP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	7e-20	595	648	1	54	Putative transcription factor PCF6
5zkt_B	7e-20	595	648	1	54	Putative transcription factor PCF6

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00203	DAP	Transfer from AT1G53230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A176W872	0.0	A0A176W872_MARPO; Uncharacterized protein
TrEMBL	A0A2R6XW17	0.0	A0A2R6XW17_MARPO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	6e-30	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

Link Out ? help Back to Top
Phytozome	Mapoly0001s0298.4.p