PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0001s0298.2.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

TCP

Protein Properties

Length: 1114aa MW: 119823 Da PI: 8.4938

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0001s0298.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.2	5.2e-37	591	755	2	128
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssa..sec.eaesssss 81 g+kdrhsk+ T++g+RdRRvRls+++a +f+d+qd+LGfd++sk++eWL+ +ak ai+el + + s c ++ ++++s Mapoly0001s0298.2.p 591 SGGKDRHSKVNTAKGPRDRRVRLSVPTAVQFYDVQDRLGFDQPSKAVEWLIHKAKDAIDELGRIpvdgkdgP---RvpSVCtSDITRHVS 677 689**********************************************************966665531...144556544444444 PP TCP 82 asnsssg.................................kaaksaakskksqksaasalnlak.esrakarararertre 128 s+s g + ++ +a++ +s++sa + la+ esr kar+rarert++ Mapoly0001s0298.2.p 678 ISSSY-GagavsglgmfaplqpnqgnfagptfgvgrmdltRPNSGSAEGGRSNESAG--SPLARvESRTKARERARERTKK 755 44222.13556677788888888889999****98655555556666666666..899999************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.9E-35	592	755	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.971	593	651	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.434	739	756	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 1114 aa Download sequence Send to blast
MILSRLREGV QNSGWTSRLR STSWRIGFEG NCWPVERDLQ DVCNRQCSDS TGYLEVSVRA 60 AKQPQSELCF SVANGSKFES KVDERARDGE RFRIERDQIR QYAQSIYRTL ADPQAAAVPT 120 EQRSSGLRSS IPGGQLACDV SKYRVQTASA NQLHPNSNDS FESINFSPSS PITDHQRELR 180 RTEIEAGLEP EGTRRQNVGE EASDQINRAT SLKNGFPLAE RASAPEKFIA EGLDDSEPAR 240 HGRGGPQNKR SSIWAKNVEL VGHGPFAFRE NIVECSTHIG VSEKEGFVLH NVIDAQASHG 300 RAKEPTADSG TPRSQNSHQR TIHPQGRQDR AKTANAIPSS PQSQALTDRV SRGAASDALG 360 TDLLPQSIGS DLLQQGTTPA RVERVQNISR TRSGGERDVE DTLKGRRYPE RIGDLRATTV 420 ATAGRQHKAE RSGEIPPVRT SQETVVGTAG VLTIPERIGG TAEDLTAREI VDVSESHSVS 480 ERVGGRAETH SAQDGGSAEG FTIRERTGGS PSEGNKIPER IGAVSDRDSA GKVQEKGKEE 540 KLHPREEGHQ RQSESSDERR LRARIDGSGG SASGGGDEIE EPKVVRPARP SGGKDRHSKV 600 NTAKGPRDRR VRLSVPTAVQ FYDVQDRLGF DQPSKAVEWL IHKAKDAIDE LGRIPVDGKD 660 GPRVPSVCTS DITRHVSISS SYGAGAVSGL GMFAPLQPNQ GNFAGPTFGV GRMDLTRPNS 720 GSAEGGRSNE SAGSPLARVE SRTKARERAR ERTKKGPGRD GNQGKVTSGG SPSSSQSPPF 780 HPNPAFNSFN ASNSIQSSGH GLSLQSPHQS ALLPAAYDGS PFSRIMQGSH QATFQNMIMH 840 NPPLDCQFGD QTQSPLHNAF LVQPQASLPS PSHTMNTLQH PHLQTMQVNA QGALHLGTNF 900 NPGPCSSSFA EASMSSPHYP PVPTLPISQS LSIPQLSSLG MSPASSLGPH YPTGSPTPIP 960 PGFSPGPPAS AFRAHSLSIS QCSNPNQNHQ QQQQQLQGLS RVQRPVPSFS TTPSTSHAGS 1020 SSSRAHAHPY YSGNSSTALM GCLQSMPSFA PRSNVGYEHG QRVRPMMSPN RIHSYQASNS 1080 QIPARIHGLD DMEELEEEPN PATPSSPHLS PHP*

Sequence ? help Back to Top

Protein Sequence Length: 1114 aa Download sequence Send to blast

MILSRLREGV QNSGWTSRLR STSWRIGFEG NCWPVERDLQ DVCNRQCSDS TGYLEVSVRA  60
AKQPQSELCF SVANGSKFES KVDERARDGE RFRIERDQIR QYAQSIYRTL ADPQAAAVPT  120
EQRSSGLRSS IPGGQLACDV SKYRVQTASA NQLHPNSNDS FESINFSPSS PITDHQRELR  180
RTEIEAGLEP EGTRRQNVGE EASDQINRAT SLKNGFPLAE RASAPEKFIA EGLDDSEPAR  240
HGRGGPQNKR SSIWAKNVEL VGHGPFAFRE NIVECSTHIG VSEKEGFVLH NVIDAQASHG  300
RAKEPTADSG TPRSQNSHQR TIHPQGRQDR AKTANAIPSS PQSQALTDRV SRGAASDALG  360
TDLLPQSIGS DLLQQGTTPA RVERVQNISR TRSGGERDVE DTLKGRRYPE RIGDLRATTV  420
ATAGRQHKAE RSGEIPPVRT SQETVVGTAG VLTIPERIGG TAEDLTAREI VDVSESHSVS  480
ERVGGRAETH SAQDGGSAEG FTIRERTGGS PSEGNKIPER IGAVSDRDSA GKVQEKGKEE  540
KLHPREEGHQ RQSESSDERR LRARIDGSGG SASGGGDEIE EPKVVRPARP SGGKDRHSKV  600
NTAKGPRDRR VRLSVPTAVQ FYDVQDRLGF DQPSKAVEWL IHKAKDAIDE LGRIPVDGKD  660
GPRVPSVCTS DITRHVSISS SYGAGAVSGL GMFAPLQPNQ GNFAGPTFGV GRMDLTRPNS  720
GSAEGGRSNE SAGSPLARVE SRTKARERAR ERTKKGPGRD GNQGKVTSGG SPSSSQSPPF  780
HPNPAFNSFN ASNSIQSSGH GLSLQSPHQS ALLPAAYDGS PFSRIMQGSH QATFQNMIMH  840
NPPLDCQFGD QTQSPLHNAF LVQPQASLPS PSHTMNTLQH PHLQTMQVNA QGALHLGTNF  900
NPGPCSSSFA EASMSSPHYP PVPTLPISQS LSIPQLSSLG MSPASSLGPH YPTGSPTPIP  960
PGFSPGPPAS AFRAHSLSIS QCSNPNQNHQ QQQQQLQGLS RVQRPVPSFS TTPSTSHAGS  1020
SSSRAHAHPY YSGNSSTALM GCLQSMPSFA PRSNVGYEHG QRVRPMMSPN RIHSYQASNS  1080
QIPARIHGLD DMEELEEEPN PATPSSPHLS PHP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	9e-20	598	651	1	54	Putative transcription factor PCF6
5zkt_B	9e-20	598	651	1	54	Putative transcription factor PCF6

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00203	DAP	Transfer from AT1G53230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6XW06	0.0	A0A2R6XW06_MARPO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	3e-30	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

Link Out ? help Back to Top
Phytozome	Mapoly0001s0298.2.p