PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Mapoly0001s0061.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 1280aa MW: 140492 Da PI: 5.1263 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2e-16 | 611 | 657 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd l ++v+++G +W++Ia ++ gR +kqc++rw+++l Mapoly0001s0061.1.p 611 KGQWTPEEDRYLMELVERHGHQRWSLIATYLK-GRIGKQCRERWHNHL 657 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.9e-17 | 663 | 705 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r+ W teE+e lv a+++lG++ W+ Ia++++ gRt++ +k++w+ Mapoly0001s0061.1.p 663 RDGWNTEEEEALVSAHNKLGNR-WADIAKMIP-GRTENAIKNHWN 705 567*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 30.862 | 606 | 661 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.12E-30 | 608 | 704 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 610 | 659 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-27 | 612 | 664 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.0E-17 | 614 | 674 | No hit | No description |
CDD | cd00167 | 3.66E-14 | 614 | 657 | No hit | No description |
PROSITE profile | PS51294 | 19.42 | 662 | 712 | IPR017930 | Myb domain |
SMART | SM00717 | 8.7E-16 | 662 | 710 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-20 | 665 | 711 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.99E-12 | 666 | 705 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1280 aa Download sequence Send to blast |
MPSNAAPSPS GPLSPRAEAA LSPEGPLLRE SNAQPFFVLE GRTHRSAMTG GKNSLIELDT 60 LGLGYALGHL LYCPSTEVLP TCLETQSGVN LSGSSEVSHS ESGFERQSTL FHEEASNPQH 120 PISLQNFQRR LSLTANFSSD YRDLHGERKS VFEIYRTVKG PRRGRKRDKC TFEQKFKLAS 180 DWQSPGIDKA ETHFPSLVAE MDSEWGSELT KEGETQPVAK NPVELQPIEV ASWWCEKRAK 240 TNKHMDYQSN FGLHQAEWPN GEGSLKRPLV WKNLPEKKAL SAEGASEAYK QSTTLGLDGR 300 DSRNLDPALN TLEIVSRNKD GPNEGQAFAS ICSRAVEASP STHFQTTDHD INNSSIGSLS 360 LGTVDCQEGT QDLNGYWKHL QERRHLNSVE RIERLPEFEN SQSSCGKEAN IDGNTSQLQQ 420 LMGIQEENSL RCLDMGAGEA SDRTNCVEAP GKDDIRRLSA DYGDGFDAGE SWSQGVCVGP 480 GDCYLLTSVH KAQLLDLQLE ENQRYRQQQS SERSRESLSL DNDARLDCGQ SNKRDAEEDG 540 SSPGGFGGLV TQRQNYFADE CSLEMQRTSG EQLTAREAYE KALNEQHDDM PGKRMFKRSS 600 KGGPRRPNII KGQWTPEEDR YLMELVERHG HQRWSLIATY LKGRIGKQCR ERWHNHLRPD 660 IKRDGWNTEE EEALVSAHNK LGNRWADIAK MIPGRTENAI KNHWNATMRR KDLRRKHRKA 720 VDGSTDGLEV VPRCTVLRDY QQKVIQFTEQ KGSSATPENG RDRLRSLEEA HARTPDLDSP 780 QVTCDSTAGW SYDRSVGSNQ LEDNSYQQLE TRTNPDMSPA EVDQLLQMIW AQDQGEEGVQ 840 FATSLNPQGN LVLQANTFGP FGAFHGPFTL QTRVSVWGQG TGSGSYSSPQ VTVWGGGWGG 900 SSMYDSGTTQ ATGGAAGAEM WDGVTSTFPP AGYVASSSPS SKPLKPDSQH GESCPPALTP 960 CGCCNEANFH SIPQDLQSLN ITRAHFVSCS ETGRDGHSMP YPLEAEQSST CKGSIMEAPA 1020 VLEANSKATA GESNPLTAQP FQIENLLPSP LNDVPGAHAC FQRSSLSLDY SQNFAGAQSQ 1080 STACISELLA HEKVLESLAN YNLSVAAENT KMIHGHQLQQ PSSTTLQEGI SVEFNTCQAL 1140 PLDAFSTSAA ELINVQSVPP YQPAPSGDYD KSESRSNDAT HVLNHSGAVM DMCFLHENIT 1200 GRGNSNSNAG PPFSMVSQED WMRSNFVEHA AGEQAKGGVV SQYGEDLVEF TPIPVDLGYY 1260 VRKGGVCCGW GDEYGSCGF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-45 | 609 | 711 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-45 | 609 | 711 | 2 | 104 | C-Myb DNA-Binding Domain |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00567 | DAP | Transfer from AT5G58850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6XV65 | 0.0 | A0A2R6XV65_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58850.1 | 9e-53 | myb domain protein 119 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Mapoly0001s0061.1.p |