PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010113475.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family SRS
Protein Properties Length: 362aa    MW: 39099 Da    PI: 7.3401
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010113475.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702219.76.2e-681322992154
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqsals 87 
                     +sg++sCqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpa+krrerq+ql ++++++ +s+          + ++kr+re +++++ ++ 
  XP_010113475.1 132 GSGGISCQDCGNQAKKDCIHMRCRTCCKSRGFECSTHVKSTWVPASKRRERQHQLLQQQQHNLSSEamineqggeIQVHPKRQREITTNTSHQIV 226
                     57899**********************************************99998888887776678888887656667777777777777777 PP

          DUF702  88 stklssaeskkeletss......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     + +++  + +++++t+s      +P+e+ss+avfrcvrvs+v+++++++aYqtav+igGh+fkGiLydqG+e+
  XP_010113475.1 227 CPTTTARNLQTNITTTSglevgnFPAELSSNAVFRCVRVSAVEENDDQYAYQTAVNIGGHLFKGILYDQGPET 299
                     77766666666666655777777************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.9E-65135298IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.9E-27137179IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.6E-28250297IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAGFFSLGSS SSSPPPGGSG SGSGRGGRLR SSGPTSTNPE IPPPESLFWY KNDQEVPSSY  60
KTFELWQQQQ QQQAEQHHHQ HHLFYRHQQD LYSSAAALGV GPSSINAGGV SDESSSRSAF  120
VMMRSSTSSG GGSGGISCQD CGNQAKKDCI HMRCRTCCKS RGFECSTHVK STWVPASKRR  180
ERQHQLLQQQ QHNLSSEAMI NEQGGEIQVH PKRQREITTN TSHQIVCPTT TARNLQTNIT  240
TTSGLEVGNF PAELSSNAVF RCVRVSAVEE NDDQYAYQTA VNIGGHLFKG ILYDQGPETN  300
YSSTSNMQAA AAGESSSGGV QPLDLITTTA ASQATPFDPS SLYPPPLNTY IAGTQFFLPP  360
RS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010113475.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010113475.10.0protein SHI RELATED SEQUENCE 1
SwissprotQ9SD401e-89SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLW9SNC60.0W9SNC6_9ROSA; Uncharacterized protein
STRINGXP_010113475.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-79Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]