PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010113396.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | GATA | ||||||||
Protein Properties | Length: 393aa MW: 43071.7 Da PI: 6.239 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.6 | 1.7e-18 | 309 | 343 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l XP_010113396.1 309 CSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRL 343 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 3.99E-14 | 302 | 364 | No hit | No description |
SMART | SM00401 | 2.4E-16 | 303 | 357 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.807 | 303 | 339 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.9E-14 | 307 | 341 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.03E-14 | 308 | 356 | No hit | No description |
Pfam | PF00320 | 2.4E-16 | 309 | 343 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 309 | 334 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MLYRTHHPFF FHFHPFTRSS SSFPSSSSSY SSSSPSSSKP STTPSPLSTQ VETEMECVEA 60 ALKTSFRKEM GVRQSPHVVF DDLLDVNVQN VVDFSVDDLL NFSDDDGFVV VEEQDQDGDK 120 DLSSPSQEQN QPAEEEAIND NNNPSTSLFV SSVPTTELTL PAEELENLEW LSHFVEESFS 180 EFSTSYLAGV SAEKPPEDET FLPEPKRFAP EKPCFTTPIP AKARSKRPRT GGRVWSLGSP 240 SFIESSSSST TSSSSSSSPT SPWLIYATHS HEPACSVQKP APKKAKKRQA VESFGSGSGP 300 ASAQPPRRCS HCGVQKTPQW RTGPLGAKTL CNACGVRFKS GRLLPEYRPA CSPTFSSDLH 360 SNHHRKVLEM RRKKESVTLP PESVLGPSVV SSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010113396.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010113396.1 | 0.0 | GATA transcription factor 5 | ||||
Swissprot | Q9FH57 | 9e-79 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | W9SCV3 | 0.0 | W9SCV3_9ROSA; GATA transcription factor | ||||
STRING | XP_010113396.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 3e-52 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 21409373 |