PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010113384.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family DBB
Protein Properties Length: 189aa    MW: 20852.7 Da    PI: 6.2941
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010113384.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-07433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++ fC  ++  lC+ C ++ H
  XP_010113384.1  4 LCDACESAAAIVFCAADEAALCRACDEKVH 33
                    7**************************998 PP
2zf-B_box25.23.4e-085391337
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                     + C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  XP_010113384.1 53 VPQCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                    689**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
CDDcd000212.95E-6345No hitNo description
PfamPF006437.7E-6342IPR000315B-box-type zinc finger
SMARTSM003361.4E-105196IPR000315B-box-type zinc finger
PfamPF006436.2E-65490IPR000315B-box-type zinc finger
CDDcd000212.37E-65484No hitNo description
PROSITE profilePS501198.6175696IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLADP SAVPQCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGN PEEPASQPAE  120
RDEARRGQNL APPKMVAEEN QQNHAVSPVW ILEANNADGH SKRDTKLIDL NMKPHKLHEQ  180
SPNDQVRLA
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010113384.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010113384.21e-136B-box zinc finger protein 18 isoform X1
SwissprotC0SVM54e-74BBX19_ARATH; B-box zinc finger protein 19
TrEMBLW9SKN41e-138W9SKN4_9ROSA; Putative salt tolerance-like protein
STRINGXP_010113384.11e-139(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-76DBB family protein