PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010113177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 24582.2 Da PI: 6.3136 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.2 | 1.9e-05 | 181 | 213 | 1 | 36 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapsk 36 +++ hn+ Er RR ++ ++ L +llP + + XP_010113177.1 181 KKQDHNAKERVRRMKLHASYLALGSLLPIS---GTS 213 6899************************87...444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.38E-5 | 179 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 8.708 | 180 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.1E-4 | 181 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MHYAAADSAT FRRVYTLHNS PSFALEAFDE LWLLEDHSST VAPTYTEINH LNPWRDLDFS 60 PHLEQGISVL AEESNNIEND GSRGNRFSTL IESSSTEPNM FGEQCSDTLQ NNTCTSRVEK 120 DLNANTFTGQ ERSIVADYLS TSVRKGFSSK KRERKSKIKH VETERSRELV ENEVEEQSLA 180 KKQDHNAKER VRRMKLHASY LALGSLLPIS GTSKVNT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010113177.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W9SFU0 | 1e-160 | W9SFU0_9ROSA; Uncharacterized protein | ||||
STRING | XP_010113177.1 | 1e-161 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18502 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71200.1 | 6e-12 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21383838 |