PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010113169.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 27239.6 Da PI: 8.3525 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65.3 | 1.1e-20 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v+++G g+W+++ar+ g++R++k+c++rw +yl XP_010113169.1 20 KGPWTPEEDKLLSEYVNLHGEGRWSSVARCAGLNRSGKSCRLRWVNYL 67 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.6e-16 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ XP_010113169.1 73 RGQITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNFWRTH 117 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.956 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-32 | 17 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-18 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-19 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-25 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.34E-13 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 24.343 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-13 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-14 | 73 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.15E-9 | 77 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MVAMTMGLGV LNIQEQGWKK GPWTPEEDKL LSEYVNLHGE GRWSSVARCA GLNRSGKSCR 60 LRWVNYLRPG LKRGQITPQE EGIIIELHAL WGNKWSTIAR YLPGRTDNEI KNFWRTHFKK 120 KEKSSLKQQK RRSQILKDKF QKDQLQAQQE NTHHTKTTTA SEEKLNIHDH HHQSQDQTTT 180 THEHHDMAFS VNGSDHQCLP VMYQDLVSCS WYDATPDQEY VLWGGLWNLD DPHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-24 | 20 | 121 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 131 | LKQQKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010113169.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010113169.1 | 1e-177 | myb-related protein 305 | ||||
Swissprot | Q9LX82 | 1e-50 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | W9SN56 | 1e-176 | W9SN56_9ROSA; Transcription factor | ||||
STRING | XP_010113169.1 | 1e-176 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 6e-70 | myb domain protein 121 |
Link Out ? help Back to Top | |
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Entrez Gene | 21383829 |
Publications ? help Back to Top | |||
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