PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010113073.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NF-YC | ||||||||
Protein Properties | Length: 259aa MW: 29028 Da PI: 6.1485 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.5 | 1.3e-55 | 77 | 180 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q iek++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_010113073.1 77 QLQTFWANQyqeIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 171 89******99999********************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_010113073.1 172 VDIVPREDL 180 ******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.01E-33 | 66 | 171 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-21 | 99 | 162 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-37 | 100 | 177 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDHPGHNQPP PMMMVGGGGQ LPYGANPYQS NQMPGNPTPG SVGSMQSVSQ AAGAQLAQHQ 60 LAYQHIQQQQ QQQLQQQLQT FWANQYQEIE KVNDFKNHSL PLARIKKIMK ADEDVRMISA 120 EAPVIFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL 180 KDEVVASIPR GTLPVGGPAD TLPYCYMPPQ HAPQVGASGM MMGKPMMDPP MYVQQAPNPY 240 MAQQMWQQPS DQQQSSSDR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-61 | 84 | 177 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 155 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010113073.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010113073.1 | 0.0 | nuclear transcription factor Y subunit C-3 | ||||
Swissprot | Q8L4B2 | 1e-87 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | W9QWK7 | 0.0 | W9QWK7_9ROSA; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | W9T316 | 0.0 | W9T316_9ROSA; Nuclear transcription factor Y subunit C-9 | ||||
STRING | XP_010086741.1 | 0.0 | (Morus notabilis) | ||||
STRING | XP_010113073.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 3e-77 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Entrez Gene | 21385554 |